Projects in Awesome Lists tagged with biological-sequences
A curated list of projects in awesome lists tagged with biological-sequences .
https://github.com/modernatx/seqlike
Unified biological sequence manipulation in Python
biological-sequences biopython machine-learning sequence
Last synced: 09 May 2025
https://github.com/biojulia/biosequences.jl
Biological sequences for the julia language
bioinformatics biojulia biological-sequences biology
Last synced: 12 Apr 2025
https://github.com/gcorso/neuroseed
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
bioinformatics biological-sequences hierarchical-clustering machine-learning multiple-sequence-alignment neurips-2021 pytorch
Last synced: 07 May 2025
https://github.com/biogenies/tidysq
tidy processing of biological sequences in R
bioconductor bioinformatics biological-sequences fasta r rstats s3 sequences tibble tidy tidyverse vctrs
Last synced: 07 Apr 2025
https://github.com/drostlab/metablastr
Seamless Integration of BLAST Sequence Searches in R
biological-sequences biomartr blast blast-hits blast-search blast-searches blasting blastn nucleotide protein sequence-diversity species
Last synced: 01 May 2025
https://github.com/dnbaker/bioseq
Tokenizers and Machine Learning Models for biological sequence data
biological-sequences machine-learning tokenization transformers
Last synced: 12 Jan 2025
https://github.com/michbur/biogram
N-Gram Analysis of Biological Sequences
biological-sequences ngram-analysis r
Last synced: 22 Apr 2025
https://github.com/biojulia/sequencevariation.jl
Biological sequence variation
biojulia biological-sequences biology variant-calling
Last synced: 15 Apr 2025
https://github.com/drostlab/seqstats
Biological Sequence Statistics in R
bioinformatics biological-data-analysis biological-sequence-statistics biological-sequences genomics
Last synced: 28 Feb 2025
https://github.com/educorreia932/fcup-binf
🧬 M:CC 2021/2022 - 1ˢᵗ year/ 2ⁿᵈ semester
bioinformatics biological-sequences fcup-abi sequence-alignment university-course
Last synced: 23 Feb 2025
https://github.com/antonioalmeida/bioseq
🍀 bioseq - a Python package to handle biological sequences and perform common Bioinformatics operations.
bioinformatics biological-sequences bioseq blast fcup msa phylogenetics upgma
Last synced: 14 Mar 2025
https://github.com/zyxue/bio-seq2seq-attention
Neural seq2seq model + attention with applications for biological sequences in mind
biological-sequences neural-network pytorch recurrent-neural-networks seq2seq
Last synced: 30 Mar 2025
https://github.com/drostlab/biodbretrievr
Retrieve and efficiently index entire biological sequence databases
biological-data biological-sequences data databasestoring retrieval
Last synced: 28 Feb 2025
https://github.com/ibchgenomic/sequenceprofiler
rust graph and sequence profiler for reads and genomes
bioinformatics biological-data-analysis biological-sequences genome-analysis graph-algorithms graphs kmers
Last synced: 30 Mar 2025
https://github.com/sciencegenome/graph-kmer
rust graph cluster making suffix arrays easier
bioinformatics biological-data-analysis biological-sequences genome-analysis graph-algorithms graphs kmers
Last synced: 16 Feb 2025
https://github.com/ipb-halle/fasta-search-service
Reusable Docker container for sequence library search and alignment in relational databases with the FASTA program package
biological-sequences docker fasta rest
Last synced: 30 Mar 2025
