Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by shenwei356
A curated list of projects in awesome lists by shenwei356 .
https://github.com/shenwei356/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
bioinformatics cross-platform fasta fastq golang manipulation sequence tool toolkit
Last synced: 02 Aug 2024
https://github.com/shenwei356/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
bioinformatics command-line cross-platform csv golang tool toolkit tsv
Last synced: 01 Aug 2024
https://github.com/shenwei356/rush
A cross-platform command-line tool for executing jobs in parallel
bioinformatics command cross-platform execute golang parallel pipeline shell windows
Last synced: 01 Aug 2024
https://github.com/shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
bioinformatics cross-platform lca lineage taxdump taxid taxonkit taxonomy
Last synced: 02 Aug 2024
https://github.com/shenwei356/brename
A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
batch batch-rename batch-rename-files batch-renamer go golang rename safe windows
Last synced: 01 Aug 2024
https://github.com/shenwei356/kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
bigsi cobs fracminhash kmer metagenomics scaled-minhash searching sketch sketching syncmers taxonomic-classification taxonomic-profiling virome
Last synced: 02 Aug 2024
https://github.com/shenwei356/bio_scripts
Practical, reusable scripts for bioinformatics
bioinformatics perl python reusable script
Last synced: 03 Aug 2024
https://github.com/shenwei356/bio
A lightweight and high-performance bioinformatics package in Golang
bioinformatics golang minimizer package scaled-minhash sequence syncmer taxdump taxonomy
Last synced: 02 Aug 2024
https://github.com/shenwei356/perfect-bioinformatic-tools
What should perfect bioinformatic tools be like?
Last synced: 03 Aug 2024
https://github.com/shenwei356/unikmer
A versatile toolkit for k-mers with taxonomic information
difference golang intersection k-mer kmer set unik union unique
Last synced: 02 Aug 2024
https://github.com/shenwei356/countminsketch
An implementation of Count-Min Sketch in Golang
bioinformatics count-min-sketch
Last synced: 02 Aug 2024
https://github.com/shenwei356/easy_qsub
Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
batch cluster cluster-files qsub submit
Last synced: 02 Aug 2024
https://github.com/shenwei356/bwt
Burrows-Wheeler Transform and FM-index in golang
bioinformatics burrows-wheeler-transform bwt fm-index
Last synced: 02 Aug 2024
https://github.com/shenwei356/gtaxon
gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both local and remote server.
bioinformatics client golang lca restful server taxonomy
Last synced: 02 Aug 2024