Projects in Awesome Lists tagged with fm-index
A curated list of projects in awesome lists tagged with fm-index .
https://github.com/lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
bioinformatics fm-index genomics sequence-alignment
Last synced: 10 Apr 2025
https://github.com/seqan/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics blast cpp-concepts cpp20 fasta fastq fm-index modern samtools seqan sequence-alignment sequence-analysis
Last synced: 15 May 2025
https://github.com/femto-dev/femto
Sequence Indexing and Search
bioinformatics chapel compressed-suffix-array compression fm-index indexing information-retrieval search
Last synced: 05 Apr 2025
https://github.com/andreaferretti/cello
A string library
burrows-wheeler-transform fm-index string-search strings succinct suffix-array wavelet-tree
Last synced: 10 Apr 2025
https://github.com/lh3/ropebwt2
Incremental construction of FM-index for DNA sequences
Last synced: 12 Mar 2025
https://github.com/ikegami-yukino/shellinford-python
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
Last synced: 21 Mar 2025
https://github.com/shenwei356/bwt
Burrows-Wheeler Transform and FM-index in golang
bioinformatics burrows-wheeler-transform bwt fm-index
Last synced: 19 Apr 2025
https://github.com/ajalab/fm-index
FM-Index for Rust
fm-index rust succinct-data-structure
Last synced: 04 Mar 2025
https://github.com/dynatrace-oss/index4j
Dynatrace FM-Index library
benchmarks bit-vector bitvector-library burrows-wheeler-transform fm-index fm-index-java index java log-processing logs rank-queries string-index string-indexing string-matching string-processing succinct succinct-data-structure system-logs wavelet-tree wavelet-tree-java
Last synced: 12 Apr 2025
https://github.com/superb-man/advanced_dsa
Some of my leisure activities.
alignment binomial-heap fm-index genetic-algorithm genome-assembly orderedmap splay-tree suffix-array suffix-tree
Last synced: 03 Mar 2025
https://github.com/kris96tian/bioinfo_tool
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
bioinformatics-tool burrows-wheeler-transform flask-application fm-index suffix-array text-processing webapp
Last synced: 05 May 2025
