Projects in Awesome Lists by Novartis
A curated list of projects in awesome lists by Novartis .
https://github.com/Novartis/tidymodules
An Object-Oriented approach to Shiny modules
communication inheritance oop r shiny shiny-modules tidy-operators
Last synced: 08 May 2025
https://github.com/Novartis/peax
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
autoencoder data-visualization deep-learning epigenomics interactive-machine-learning pattern-search sequential-data
Last synced: 07 May 2025
https://github.com/Novartis/torchsurv
Deep survival analysis made easy
deep-learning pytorch survival-analysis
Last synced: 18 Jan 2025
https://github.com/Novartis/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
dataviz h5ad rna-seq scientific scrna-seq transcriptomics visualization
Last synced: 18 Jan 2025
https://github.com/Novartis/scar
scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
cite-seq crispr-screen denoising-algorithm generative-model machine-learning probabilistic-graphical-models pytorch single-cell-rna-seq variational-autoencoder
Last synced: 18 Jan 2025
https://github.com/Novartis/shinyValidator
Audit your Shiny apps at each commit. Multiple levels of testings are offered: startup and crash tests, performance tests (load test and global code profiling), reactivity audit as well as output tests. All results are gathered in an HTML report uploaded and available to everyone on any CI/CD plaform or RStudio Connect
audit headless profiling r shiny shinyloadtest shinytest2
Last synced: 06 May 2025
https://github.com/Novartis/ontobrowser
OntoBrowser is a web-based application for managing ontologies
Last synced: 18 Jan 2025
https://github.com/Novartis/pQSAR
Massively multitask stacked model for predicting activity of thousands of biological assays
Last synced: 18 Jan 2025
https://github.com/Novartis/yap
High throughput, pain-free big data pipelines.
Last synced: 18 Jan 2025
https://github.com/Novartis/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
bioinformatics bioinformatics-pipeline rnaseq rnaseq-pipeline salmon transcriptomics
Last synced: 18 Jan 2025
https://github.com/Novartis/pqsar2cpd
pqsar2cpd is a deep learning algorithm for translation of activity profiles into novel molecules.
Last synced: 18 Jan 2025
https://github.com/Novartis/ChemBioMultimodalAutoencoders
a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
Last synced: 18 Jan 2025
https://github.com/Novartis/easyTrackHubs
This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of a UCSC Track Hub ready to be visualized in the genome browser. For details about it's use, please have a look at the vignette of the package.
Last synced: 18 Jan 2025
https://github.com/Novartis/JAEGER
JAEGER is a deep generative approach for small-molecule design
Last synced: 18 Jan 2025
https://github.com/Novartis/DRUG-seq
DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
Last synced: 18 Jan 2025
https://github.com/Novartis/Causal-inference-in-RCTs
This repository contains code examples for several methods in a Causal Inference in RCTs short course.
Last synced: 18 Jan 2025
https://github.com/Novartis/patprofile
Standard patient profile for shiny apps
Last synced: 18 Jan 2025
https://github.com/Novartis/habitat
"Where files live" - Simple object management system using AWS S3 and Elasticsearch Service to manage objects and their metadata
Last synced: 04 Dec 2024