Projects in Awesome Lists tagged with codon-usage
A curated list of projects in awesome lists tagged with codon-usage .
https://github.com/edinburgh-genome-foundry/python_codon_tables
:bar_chart: Codon usage tables in code-friendly format + Python bindings
bioinformatics codon-optimization codon-usage synbio
Last synced: 12 Dec 2025
https://github.com/Edinburgh-Genome-Foundry/python_codon_tables
:bar_chart: Codon usage tables in code-friendly format + Python bindings
bioinformatics codon-optimization codon-usage synbio
Last synced: 09 Jan 2026
https://github.com/koeng101/dnadesign
A Go package for designing DNA.
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology
Last synced: 13 Apr 2025
https://github.com/souradiptoc/codonu
A python project for analysis of codon usage for gene or genome analysis
bioinformatics bioinformatics-analysis bioinformatics-tool cai cbi codon codon-bias codon-usage codonw enc genome genome-analysis rscu tai
Last synced: 14 Dec 2025
https://github.com/mt1022/cubar
R Package for Codon Usage Bias Analysis. Comprehensive documentation and tutorials are available at:
bioinformatics codon-usage machine-learning r-package sequence-analysis
Last synced: 22 Oct 2025
https://github.com/stracquadaniolab/cubseq-nf
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
codon-bias codon-optimization codon-usage nextflow rnaseq transcriptomics
Last synced: 17 Oct 2025
https://github.com/samia35-2973/living-type-classification-from-codon-usage
Machine learning project to classify living types based on codon usage data using Random Forest and XGBoost classifiers.
classification codon-usage data-cleaning data-preprocessing excel exploratory-data-analysis living-type machine-learning python random-forest-classifier scikit-learn supervised-learning xgboost-classifier
Last synced: 05 Mar 2025
https://github.com/bibymaths/codonanalyzer
A collection of Perl scripts for analyzing DNA and protein sequences, featuring tools for rare codon detection, GC content profiling, and hydropathy plotting, optimized for Escherichia coli datasets.
codon-usage dna-sequences perl protein
Last synced: 18 Oct 2025
