Projects in Awesome Lists tagged with evolutionary-biology

https://github.com/jlsteenwyk/clipkit

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics

Last synced: 12 Jan 2025

https://github.com/JLSteenwyk/ClipKIT

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics

Last synced: 12 May 2025

https://github.com/jlsteenwyk/phykit

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

bioinformatics evolution evolutionary-biology genomics multiple-sequence-alignments phylogenetics phylogenomics python

Last synced: 22 Mar 2025

https://github.com/neurogenomics/orthogene

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

animal-models bioconductor bioconductor-package bioinformatics biomedicine comparative-genomics evolutionary-biology genes genomics ontologies r r-package translational-research

Last synced: 31 Jan 2025

https://github.com/jlsteenwyk/orthofisher

a broadly applicable tool for automated gene identification and retrieval

bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python

Last synced: 19 Dec 2024

https://github.com/jlsteenwyk/orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python

Last synced: 19 Apr 2025

https://github.com/alexlancaster/pypop

PyPop: Python for Population Genomics

bioinformatics evolutionary-biology free-software open-source population-genomics

Last synced: 06 Apr 2025

https://github.com/ms609/treetools

Create, modify and analyse phylogenetic trees in R

cran evolutionary-biology phylogenetic-trees phylogenetics r-package

Last synced: 08 May 2025

https://github.com/jlsteenwyk/biokit

a versatile toolkit for processing and analyzing diverse types of sequence data

bioinformatics comparative-genomics evolution evolutionary-biology evolutionary-genomics genomics python

Last synced: 18 Dec 2024

https://github.com/JakobStenseke/EvolutionSimulation01

Evolutionary simulation where agents age, reproduce, and eat each other

evolution evolution-simulation evolutionary-biology predator-prey unity

Last synced: 25 Apr 2025

https://github.com/sysbiochalmers/hgtphylodetect

HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.

evolutionary-biology high-throughput-pipeline horizontal-gene-transfer phylogenetics sequence-analysis systems-biology

Last synced: 03 Dec 2024

https://github.com/stolarczyk/BALCONY

R package: BALCONY (Better ALignment CONsensus analYsis)

alignment conservation evolutionary-biology protein protein-tunnels

Last synced: 04 Dec 2024

https://github.com/stolarczyk/balcony

R package: BALCONY (Better ALignment CONsensus analYsis)

alignment conservation evolutionary-biology protein protein-tunnels

Last synced: 10 Feb 2025

https://github.com/MindTheGap-ERC/DarwinCAT

Shiny app visualizing the effects of carbonate stratigraphy on trait evolution

carbonate-sedimentology evolutionary-biology geology palaeobiology palaeontology paleontology r sedimentology shiny stratigraphic-paleobiology stratigraphy trait-evolution

Last synced: 22 Nov 2024

https://github.com/jbris/beast2-experiments

Experiments with the BEAST 2 software

bayesian bayesian-inference bayesian-statistics beast2 compartmental-model compartmental-modeling compartmental-models evolutionary evolutionary-biology evolutionary-models phylodynamics phylogenetic-trees phylogenetics phylogeny phylogeography

Last synced: 30 Apr 2025

https://github.com/watanabe-j/eigvaldisprcpp

Rcpp extension of eigvaldisp

evolutionary-biology morphometrics r r-package rcpp

Last synced: 27 Mar 2025

https://github.com/chiara-cattani/genetic-fertility-longevity-trade-off

Exploring the genetic and behavioral factors behind the fertility-longevity trade-off, this project uses survival analysis and polygenic risk scores to uncover the complex interplay of reproductive behavior, socio-demographic influences, and genetic predispositions in shaping human lifespan.

evolutionary-biology fertility genetics longevity polygenic-risk-scores r survival-analysis