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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with evolutionary-biology
A curated list of projects in awesome lists tagged with evolutionary-biology .
https://github.com/JLSteenwyk/ClipKIT
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics
Last synced: 18 Nov 2024
https://github.com/jlsteenwyk/clipkit
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics
Last synced: 21 Dec 2024
https://github.com/jlsteenwyk/phykit
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
bioinformatics evolution evolutionary-biology genomics multiple-sequence-alignments phylogenetics phylogenomics python
Last synced: 21 Dec 2024
https://github.com/jlsteenwyk/orthofisher
a broadly applicable tool for automated gene identification and retrieval
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Last synced: 19 Dec 2024
https://github.com/alexlancaster/pypop
PyPop: Python for Population Genomics
bioinformatics evolutionary-biology free-software open-source population-genomics
Last synced: 16 Dec 2024
https://github.com/jlsteenwyk/biokit
a versatile toolkit for processing and analyzing diverse types of sequence data
bioinformatics comparative-genomics evolution evolutionary-biology evolutionary-genomics genomics python
Last synced: 18 Dec 2024
https://github.com/jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Last synced: 08 Nov 2024
https://github.com/JakobStenseke/EvolutionSimulation01
Evolutionary simulation where agents age, reproduce, and eat each other
evolution evolution-simulation evolutionary-biology predator-prey unity
Last synced: 10 Nov 2024
https://github.com/sysbiochalmers/hgtphylodetect
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
evolutionary-biology high-throughput-pipeline horizontal-gene-transfer phylogenetics sequence-analysis systems-biology
Last synced: 03 Dec 2024
https://github.com/stolarczyk/balcony
R package: BALCONY (Better ALignment CONsensus analYsis)
alignment conservation evolutionary-biology protein protein-tunnels
Last synced: 10 Oct 2024
https://github.com/stolarczyk/BALCONY
R package: BALCONY (Better ALignment CONsensus analYsis)
alignment conservation evolutionary-biology protein protein-tunnels
Last synced: 04 Dec 2024
https://github.com/MindTheGap-ERC/DarwinCAT
Shiny app visualizing the effects of carbonate stratigraphy on trait evolution
carbonate-sedimentology evolutionary-biology geology palaeobiology palaeontology paleontology r sedimentology shiny stratigraphic-paleobiology stratigraphy trait-evolution
Last synced: 22 Nov 2024
https://github.com/gauravcodepro/evolutionary-fitness-calculation
A data structure approach to generate a random sequence from the polyATGC stretches for evolutionary fitness
bioinformatics evolutionary-algorithms evolutionary-biology evolutionary-computation modelling-framework ruby rubyprogramming
Last synced: 09 Nov 2024
https://github.com/applicativesystem/go-reference-alignment-estimate
estimate the alignment stats based on a selected reference genome or gene sequence from the alignment
bioinformatics evolutionary-biology evolutionary-computation genome-alignment-bioinformatics phylogenomics phylogenomics-bioinformatics phylogenomics-golang whole-genome-sequencing
Last synced: 16 Dec 2024
https://github.com/uscbiostats/geese
GEne-functional Evolutionary model using SufficiEncy
biostatistics evolutionary-biology gene-evolution gene-functions phylogenetics rpackage rstats
Last synced: 11 Nov 2024
