Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by JLSteenwyk
A curated list of projects in awesome lists by JLSteenwyk .
https://github.com/jlsteenwyk/ggpubfigs
colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures
colorblind-friendly figure figure-maker ggplot ggplot-extension ggplot2 r
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/clipkit
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/phykit
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
bioinformatics evolution evolutionary-biology genomics multiple-sequence-alignments phylogenetics phylogenomics python
Last synced: 02 Oct 2024
https://github.com/JLSteenwyk/ClipKIT
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
bioinformatics evolution evolutionary-biology genomics phylogenetics phylogenomics python systematics
Last synced: 03 Aug 2024
https://github.com/jlsteenwyk/orthofisher
a broadly applicable tool for automated gene identification and retrieval
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/biokit
a versatile toolkit for processing and analyzing diverse types of sequence data
bioinformatics comparative-genomics evolution evolutionary-biology evolutionary-genomics genomics python
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Last synced: 01 Oct 2024
https://github.com/jlsteenwyk/latch_library
A library of code snippets used in Latch SDK development
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/treehouse
A shiny R application to prune phylogenies in our database or user input and obtain a subtree
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/fun_scripts
a repository of fun scripts I have written
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/pathogenic_allodiploid_hybrids_of_aspergillus_fungi
Holds code and files associated with Pathogenic allodiploid hybrids of Aspergillus fungi
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/budding_yeast_coevolution_network
Budding yeast coevolution network
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/my_latch_workflows
repository of all the LatchBio workflows I've written
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/latch_wf_clipkit
workflow for launching ClipKIT on the Latch platform
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/latch_wf_orthosnap
OrthoSNAP workflow for LatchBio SDK
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/latch_wf_seq_to_tree
codebase for latch workflow that infers the evolutionary history for a set of sequences
Last synced: 02 Oct 2024
https://github.com/jlsteenwyk/2024_phylogenomics_workshop
2024 workshop on phylogenomics, organized by Evomics
Last synced: 02 Oct 2024