https://github.com/neurogenomics/orthogene

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

animal-models bioconductor bioconductor-package bioinformatics biomedicine comparative-genomics evolutionary-biology genes genomics ontologies r r-package translational-research

Last synced: 14 Oct 2025

https://github.com/nasa/GeneLab-Training

A repository for GeneLab Training documentation.

education genes genetics nasa outreach pipeline training training-materials

Last synced: 26 Jun 2025

https://github.com/dhimmel/disgenet

Processing the DisGeNET database of disease–gene association

associations disease disease-gene-association disgenet genes hetionet rephetio

Last synced: 12 Apr 2025

https://github.com/biojulia/genomicannotations.jl

bioinformatics biology genbank genes genome-annotation gff3 julia

Last synced: 13 Apr 2025

https://github.com/alejandrogzi/bed2gtf

high-performance BED-to-GTF converter written in Rust

bed bioinformatics gene-annotation genes genome-annotation gtf

Last synced: 13 Oct 2025

https://github.com/samuel-oldra/monografia

🎓 Monografia / TCC / Sistemas de Informação

genes genetic-diseases latex monography protein tcc tex

Last synced: 21 Mar 2025

https://github.com/samuel-oldra/bionet

🎓 BioNet / TCC / Sistemas de Informação

genes genetic-diseases nusoap php protein regular-expression tcc

Last synced: 21 Mar 2025

https://github.com/fullofcaffeine/reflaxe.elixir

Elixir target for Haxe. Compile Haxe to (mostly idiomatic) Elixir.

alternative-to-gleam compiler elixir fullstack genes gleam haxe haxe-externs haxe-library haxe-to-elixir macros phoenix reflaxe transpiler typed typesafe

Last synced: 13 Jun 2026

https://github.com/laurensvdwiel/metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

domain-homology gene-annotation genes genetic-tolerance genetics pathogenic-variants pathogenicity protein-annotation protein-domains proteins variant-annotations variant-interpretation

Last synced: 26 May 2026

https://github.com/kyegomez/prometheus

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

ai bioml gene-generation genes genomic genomics genomics-data llms mamba ml rnns ssm

Last synced: 07 May 2025

https://github.com/csbiology/tmea

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.

bioinformatics biostatistics deedle enrichment-score f-sharp genes gsea plotly

Last synced: 30 Jul 2025

https://github.com/dhimmel/gene-ontology

User-friendly Gene Ontology annotations

annotations gene-ontology genes github-pages ontology rephetio

Last synced: 12 Apr 2025

https://github.com/stevekm/reportit

IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results

analysis genes igv iontorrent iontorrent-server panel pipeline reporting visualizations

Last synced: 30 Oct 2025

https://github.com/deprekate/prfect

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

annotation bacteria bioinformatics genes genomics phages

Last synced: 23 Mar 2025

https://github.com/dhimmel/het.io-dag-data

Data backend for http://het.io/disease-genes

disease genes hetio hetio-dag hetnet plos-computational-biology

Last synced: 02 Feb 2026

https://github.com/girkovarpa/genetic-origins-heatmap

Use your DNA data (e.g. from 23andMe) to paint a global heatmap of your origins.

23andme ancestry dna ftdna gedmatch genes genomics k36 map myheritage pysciter sciter sciter-js wegene

Last synced: 18 Mar 2025

https://github.com/gagniuc/promkappa-1.0-makes-objective-digital-stains

PromKappa 1.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns).

bioinformatics digital dna genes genetics genomics objective ods promoters stains vb6

Last synced: 10 Mar 2026

https://github.com/gagniuc/promkappa-3.0-objective-digital-stains-in-vb6

PromKappa 3.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns). The main output of the application consists of a series of images that are saved in the 'chart' (or 'chart_comp') folder and which can be later analyzed using different methods.

bioinformatics digital dna genes genetics genomics objective ods promoters stains vb6

Last synced: 12 Feb 2026

https://github.com/dangreco/jean

Computational biology utility library for Rust featuring sequence alignment, genome annotation, and I/O of biological files

bioinformatics biology computational-biology dna genes genetics protein rna

Last synced: 14 Apr 2025

https://github.com/dhimmel/entrez-gene

Processing the human Entrez Gene subset

entrez-gene genes hetionet human rephetio terminology

Last synced: 15 Jun 2025

https://github.com/dhimmel/ppi

Compiling human protein–protein interactions

genes hetionet ppi protein-interaction proteins rephetio

Last synced: 13 May 2025

https://github.com/vbaliga/genbank_downloadr

🔬 Batch downloading of DNA or protein sequences from GenBank

fasta genbank genes purrr r rentrez rstats tidyverse

Last synced: 03 Apr 2025

https://github.com/antonkulaga/genotations

A small library to work with ensembl and other annotations in python

annotations bioinformatics ensembl genes genomics gtf polars transcriptomics

Last synced: 07 Sep 2025

https://github.com/robertaboukhalil/oct4th

CLI for converting CSV/TSV files to Excel spreadsheets without mangling gene names

excel genes

Last synced: 29 Apr 2025

https://github.com/dhimmel/tissues

Gene–Tissue relationships from the TISSUES database

anatomy genes hetionet rephetio tissues

Last synced: 05 Jan 2026

https://github.com/bio2bel/hgnc

Hugo Gene Nomenclature Consortium (HGNC) to BEL

biological-expression-language genes hgnc terminology

Last synced: 14 Jan 2026

https://github.com/dhimmel/pathways

A compilation of pathway gene sets

genes hetionet human pathway-commons pathway-interaction-database pathways reactome rephetio tsv wikipathways

Last synced: 23 Mar 2025

https://github.com/abhijeetsingh1704/redigest

REDigest: a Python GUI for In-Silico Restriction Digestion Analysis for Gene or Complete Genome Sequences

complete-genomes genes genome in-silico in-silico-restriction multifasta restriction restriction-digestion restriction-enzyme

Last synced: 26 Oct 2025

https://github.com/pmpfe/genexplore

A simple desktop application for analyzing human genome sequence data against the GWAS Catalog, now featuring polygenic risk score analysis. This is an exploration tool, not a medical instrument.

23andme association-studies genes genetics genome monogenic polygenic-risk-scores

Last synced: 24 Jun 2026

https://github.com/dhimmel/erc

Processing human Evolutionary Rate Covariation data

data erc evolution evolutionary-rate-covariation genes hetionet human rephetio

Last synced: 23 Jul 2025

https://github.com/emiliesecherre/famat

Functional analysis of metabolic and transcriptomic data

compound gene-ontology genes pathways shiny

Last synced: 18 Feb 2026

https://github.com/corentinth/smartrockets-geneticalgorithm

Genetic Algorithm to find optimal path for rocket to take.

genes population smart-rockets smartrockets-geneticalgorithm

Last synced: 07 Apr 2025

https://github.com/dhimmel/doaf

Processing data from DOAF, the Disease Ontology Annotation Framework

association diseases doaf generif genes hetionet rephetio

Last synced: 23 Mar 2025

https://github.com/domenico-somma/papillon

A python module to read and plot Galaxy RNA-seq data

cuffdiff cufflinks cummerbund galaxy-project genes heatmap isoforms plot rna-seq transcript

Last synced: 16 Jul 2026

https://github.com/mdcatapult/aurac-web-plugin

Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.

chrome compounds firefox genes life-sciences ner proteins

Last synced: 14 May 2026

https://github.com/bio2bel/entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

bioinformatics biological-expression-language entrez-gene genes ncbigene networks-biology orthology systems-biology terminology

Last synced: 11 Mar 2026

https://github.com/saezlab/omnipath-utils

Prior-knowledge processing utilities Python package, database and web API

drugs genes metabolites omics orthologs proteins taxonomy

Last synced: 31 May 2026

https://github.com/dhimmel/adeptus

ADEPTUS -- differential gene expression signatures of disease

adeptus data differential-expression disease gene-expression genes rephetio

Last synced: 05 Jan 2026

https://github.com/ssi-dk/ecoli_fbi

Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.

ecoli fbi genes serotype virulence

Last synced: 20 Aug 2025

https://github.com/robertaboukhalil/oct4th.js

Web app for converting CSV/TSV files to Excel spreadsheets without mangling gene names

excel genes

Last synced: 08 Mar 2025

https://github.com/javiermerinom/gene_expression_breast_cancer-classification-analysis

This project explores breast cancer classification and survival analysis using RNA-seq data from The Cancer Genome Atlas (TCGA-BRCA). The workflow includes differential expression analysis (DEA), dimensionality reduction, and machine learning models for tumor vs. normal classification, cancer stage prediction, and patient survival analysis.

deseq2 eda genes grid-search-hyperparameters lda machine-learning nca pca random-forest-classifier rna-seq-analysis shaft tcga-data volcano-plot vst xgboost-classifier

Last synced: 23 Jun 2026

https://github.com/mdcatapult/bio-aurac

Coordinating repository allowing users to run the bio-aurac application.

bioinformatics chrome-extension firefox-extension genes life-sciences ner proteins

Last synced: 18 Apr 2026

https://github.com/dhimmel/hgnc

Extracting human gene families from HGNC

data gene-families genes hgnc hugo human

Last synced: 01 May 2026

https://github.com/carrascomj/drastic

Deep Rapid Annotation using Submodels Training in Cells

annotation deep-learning genes genome pytorch

Last synced: 04 May 2026

https://github.com/glickmac/grab

Retrieve and create a custom BLAST database by taxonomic search

bacteria bacterial-database blast database genbank genes genome genomics grab-workflow protein

Last synced: 09 May 2026

https://github.com/umpolungfish/gene_imscriber

The genetic code is a stratified Frobenius algebra on B₄³ codon space

genes genetics imscrib imscribing imscribing-grammar imscription imscriptive

Last synced: 12 Jun 2026

https://github.com/cyanheads/ensembl-mcp-server

Look up genes, fetch sequences, predict variant consequences, find orthologs and cross-database xrefs via Ensembl REST via MCP. STDIO or Streamable HTTP.

ai-agents ai-tools bioinformatics cyanheads ensembl genes genomics mcp mcp-server model-context-protocol typescript

Last synced: 20 Jun 2026

https://github.com/hozaifao/gene-om

This is a Java Project that gives you a valid 3 multiple ATG Gene in a DNA sequence file. IT takes one file as input and gives you the Gene Sequence in the DNA.

dna-sequences genes java

Last synced: 16 Mar 2025