Projects in Awesome Lists tagged with gsea
A curated list of projects in awesome lists tagged with gsea .
https://github.com/YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
enrichment-analysis go gsea kegg rstats visualization
Last synced: 07 May 2025
https://github.com/zqfang/GSEApy
Gene Set Enrichment Analysis in Python
enrichment-analysis gsea python3 rust
Last synced: 28 Apr 2025
https://github.com/broadinstitute/ssgsea2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gene-sets gsea ksea pathway-enrichment-analysis phosphoproteomics ptm-enrichment-analysis ptm-sea ptm-signatures ptm-sites
Last synced: 03 Apr 2025
https://github.com/stemangiola/tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
bioconductor bulk-transcriptional-analyses deseq2 differential-expression edger ensembl-ids entrez gene-symbols gsea mds-dimensions pca pipe redundancy tibble tidy tidy-data tidyverse transcriptomics transcripts tsne
Last synced: 04 Dec 2024
https://github.com/krassowski/gsea-api
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
bioinformatics cuda enrichment gene-set-enrichment gene-sets gsea pandas pathway-analysis python3 transcriptomics
Last synced: 13 Apr 2025
https://github.com/nicolash2/gggsea
GSEA plots in ggplot2
geneset geneset-enrichment geneset-enrichment-analysis ggplot2 graph gsea
Last synced: 13 Apr 2025
https://github.com/sib-swiss/enrichment-analysis-training
Course material for Enrichment analysis course by SIB
enrichment enrichment-analysis gsea r tutorial-course
Last synced: 26 Jan 2025
https://github.com/csbiology/tmea
Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
bioinformatics biostatistics deedle enrichment-score f-sharp genes gsea plotly
Last synced: 04 Dec 2024
https://github.com/acastanza/seqformat
RNA-seq Preprocessing for GSEA
gsea msigdb rna-seq rna-seq-analysis rna-seq-pipeline
Last synced: 24 Apr 2025
https://github.com/genepattern/gsea2
Module for GSEA Julia Implementation
genepattern-module geneset-enrichment-analysis gsea julia
Last synced: 20 Feb 2025
https://github.com/genepattern/single.cell.ssgsea
The method for this module is still under active development, not finalized, and should not be used.
genepattern gp-module gsea scgsea ssgsea
Last synced: 13 Mar 2025
https://github.com/acastanza/gsea_r_old
Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)
bioinformatics gsea microarray rna-seq
Last synced: 24 Apr 2025
https://github.com/nicolash2/gseacondenser
condense GSEA terms
gene-set gene-set-analysis gene-set-clustering gene-set-enrichment gsea
Last synced: 20 Mar 2025