Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by broadinstitute
A curated list of projects in awesome lists by broadinstitute .
https://github.com/broadinstitute/gatk
Official code repository for GATK versions 4 and up
bioinformatics dna gatk genome genomics ngs science sequencing spark
Last synced: 03 Aug 2024
https://github.com/broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
application bioinformatics cloud containers docker executor ga4gh hpc scala wdl workflow workflow-description-language workflow-execution
Last synced: 31 Jul 2024
https://github.com/broadinstitute/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last synced: 03 Aug 2024
https://github.com/broadinstitute/infercnv
Inferring CNV from Single-Cell RNA-Seq
Last synced: 03 Aug 2024
https://github.com/broadinstitute/inferCNV
Inferring CNV from Single-Cell RNA-Seq
Last synced: 01 Aug 2024
https://github.com/broadinstitute/Tangram
Spatial alignment of single cell transcriptomic data.
computational-biology gene-expression scrna-seq snrna-seq spatial-data visium
Last synced: 02 Aug 2024
https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
Last synced: 02 Aug 2024
https://github.com/broadinstitute/mutect
MuTect -- Accurate and sensitive cancer mutation detection
Last synced: 02 Aug 2024
https://github.com/broadinstitute/cellpainting-gallery
Cell Painting Gallery
Last synced: 03 Aug 2024
https://github.com/broadinstitute/wdl
Workflow Description Language - Specification and Implementations
Last synced: 02 Aug 2024
https://github.com/broadinstitute/poasta
Fast and exact gap-affine partial order alignment
Last synced: 03 Aug 2024
https://github.com/broadinstitute/grit-benchmark
Benchmarking a metric used to evaluate a perturbation strength
Last synced: 02 Aug 2024
https://github.com/broadinstitute/epi-correlation
Correlation analysis between pairs of ChIPseq aligned bams
Last synced: 02 Aug 2024
https://github.com/broadinstitute/taigr
Light weight R package for loading datasets from taiga. Conveniently caches data to your hard disk.
Last synced: 02 Aug 2024