Projects in Awesome Lists tagged with pathway-enrichment-analysis
A curated list of projects in awesome lists tagged with pathway-enrichment-analysis .
https://github.com/broadinstitute/ssgsea2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gene-sets gsea ksea pathway-enrichment-analysis phosphoproteomics ptm-enrichment-analysis ptm-sea ptm-signatures ptm-sites
Last synced: 03 Apr 2025
https://github.com/egeulgen/pathfindr
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
active-subnetworks enrichment pathway pathway-enrichment-analysis r subnetwork
Last synced: 30 Apr 2025
https://github.com/egeulgen/pathfindR
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
active-subnetworks enrichment pathway pathway-enrichment-analysis r subnetwork
Last synced: 13 Dec 2024
https://github.com/saezlab/carnival
CAusal Reasoning for Network Identification with integer VALue programming in R
causal-models footprints integer-linear-programming pathway-enrichment-analysis r
Last synced: 09 Apr 2025
https://github.com/dvklopfenstein/reactomepy
Explore biomolecular pathways in Reactome from the command-line or a Python script
bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-scripts bioinformatics-tool biological-networks biotech biotechnology molecular-biology pathway-analysis pathway-enrichment-analysis pathway-models protein-protein-interaction reactome reactome-pathway
Last synced: 21 Mar 2025
https://github.com/pathwayforte/pathway-forte
A Python package for benchmarking pathway database with functional enrichment and classification methods
benchmarking bioinformatics databases machine-learning pathway-analysis pathway-enrichment-analysis systems-biology
Last synced: 19 Dec 2024
