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Projects in Awesome Lists by ACastanza

A curated list of projects in awesome lists by ACastanza .

https://github.com/acastanza/pvpalerts

Patching Miat's PvP Alerts for ESO to Keep Compatibility

Last synced: 24 Apr 2025

https://github.com/acastanza/salmon.alevin.quant

Salmon Alevin (single cell) quantification wrapper module for GenePattern.

Last synced: 24 Apr 2025

https://github.com/acastanza/seqformat

RNA-seq Preprocessing for GSEA

gsea msigdb rna-seq rna-seq-analysis rna-seq-pipeline

Last synced: 24 Apr 2025

https://github.com/acastanza/ssgseapy

Python port of ssGSEA

Last synced: 24 Apr 2025

https://github.com/acastanza/provisionsteamformation

ProvisionsTeamFormation with my personal adjustments

Last synced: 24 Apr 2025

https://github.com/acastanza/miats_cc_tracker_patched

Updated Version of Miat's CC Tracker

Last synced: 24 Apr 2025

https://github.com/acastanza/plaguecontainment

Code for an ESO Plaguebreak Purge Blocker

Last synced: 24 Apr 2025

https://github.com/acastanza/velocyto_preprocessbam

Wrapper script for preprocessing BAM files for analysis with velocyto in GenePattern

Last synced: 24 Apr 2025

https://github.com/acastanza/tximport.deseq2

tximport.DESeq2 wrapper module for GenePattern.

Last synced: 24 Apr 2025

https://github.com/acastanza/scvelo.computevelocity

scVelo wrapper module for GenePattern

Last synced: 24 Apr 2025

https://github.com/acastanza/scanpyqc

Genepattern wrapper module for ScanpyQC

Last synced: 24 Apr 2025

https://github.com/acastanza/roc.predict

Phenotype prediction using ssGSEA_ROC results

Last synced: 24 Apr 2025

https://github.com/acastanza/rseqc.infer_experiment

RSeQC.infer_experiment wrappers for GenePattern.

Last synced: 24 Apr 2025

https://github.com/acastanza/join.files

Simple file joiner for GenePattern.

Last synced: 24 Apr 2025

https://github.com/acastanza/convert.10xbam.to.fastq

10x bamtofastq wrapper module for GenePattern

Last synced: 24 Apr 2025

https://github.com/acastanza/gsea_r_old

Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)

bioinformatics gsea microarray rna-seq

Last synced: 24 Apr 2025

https://github.com/acastanza/deseq2.normalize

Wrapper for DESeq2 based normalization-only module.

Last synced: 24 Apr 2025

https://github.com/acastanza/preprocessvelocitytranscriptome

Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.

Last synced: 24 Apr 2025

https://github.com/acastanza/convert.alevin

Convert alevin wrapper module for GenePattern.

Last synced: 24 Apr 2025

https://github.com/acastanza/cellrank.fatemap

CellRank wrapper module for GenePattern

Last synced: 24 Apr 2025

https://github.com/acastanza/actionbarskillstyles

Enable Skill Style Overrides for Action Bar Icons

Last synced: 24 Apr 2025

https://github.com/acastanza/10x.results.to.velocity.loom

Wrapper script for a GenePattern module to create a velocity compatible loom file from single cell bam files

Last synced: 24 Apr 2025

https://github.com/acastanza/combatmetronomeupdated

Bugfixes for Combat Metronome (GCD Tracker) Update by barny

Last synced: 24 Apr 2025