https://github.com/mdcatapult/py-mongo

Wrapper for pymongo to allow simple instantiation of MongoDB from configuration.

mongodb python

Last synced: 31 Mar 2025

https://github.com/mdcatapult/json-combiner

Utility to scan and parse files by format and convert them into json output that can be ingested by mongoimport, Currently supports parsing of json and xml formats

Last synced: 31 Mar 2025

https://github.com/mdcatapult/image-model-runner

Last synced: 31 Mar 2025

https://github.com/mdcatapult/aurac-web-plugin

Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.

chrome compounds firefox genes life-sciences ner proteins

Last synced: 31 Mar 2025

https://github.com/mdcatapult/pdf-converter

Webservice to convert PDFs to HTML

converter pdf webservice

Last synced: 31 Mar 2025

https://github.com/mdcatapult/openseadragon

MDC clone of openseadragon

Last synced: 31 Mar 2025

https://github.com/mdcatapult/py-postgres

Methods to simplify configuring and connecting to Postgresql databases

postgresql python

Last synced: 31 Mar 2025

https://github.com/mdcatapult/scala-queue

Use Scala & Pekko to send and receive typed messages with RabbitMQ

pekko-connnectors pekko-streams play-ws-standalone scala

Last synced: 31 Mar 2025

https://github.com/mdcatapult/entity-recognition

Web service to recognise entities in html using a redis based dictionary

dictionary ner redis webservice

Last synced: 31 Mar 2025

https://github.com/mdcatapult/bio-aurac

Coordinating repository allowing users to run the bio-aurac application.

bioinformatics chrome-extension firefox-extension genes life-sciences ner proteins

Last synced: 31 Mar 2025

https://github.com/mdcatapult/supervisor

Part of the Document Library micro service ecosystem. Co-ordinates all the consumer micro services.

cats mongodb pekko rabbitmq scala

Last synced: 24 Mar 2025

https://github.com/mdcatapult/unarchiver

Part of the Document Library micro service ecosystem. Uncompresses files that have been archived using zip, tar, gzip, 7zip & more

cats mongodb pekko rabbitmq scala

Last synced: 24 Mar 2025

https://github.com/mdcatapult/xml-splitter

Last synced: 31 Mar 2025

https://github.com/mdcatapult/py-config

Python lib that allows environment variables to override hocon style yaml or json config

config environment-variables hocon python

Last synced: 14 Apr 2025

https://github.com/mdcatapult/viawebgl

MDC clone of viawebgl

Last synced: 31 Mar 2025

https://github.com/mdcatapult/coshh-api

Go API complementing the COSHH UI web app

Last synced: 31 Mar 2025

https://github.com/mdcatapult/coshh-ui

Angular web app for tracking the locations and expiry dates of laboratory chemicals

Last synced: 31 Mar 2025

https://github.com/mdcatapult/py-queue

Module to abstract queues. Currently implements RabbitMQ.

python rabbitmq

Last synced: 31 Mar 2025