Projects in Awesome Lists tagged with pangenome-inference
A curated list of projects in awesome lists tagged with pangenome-inference .
https://github.com/gauravcodepro/pangenome-evolutionary
a complete workflow for analyzing the pangenomes from the core genesets. simply have to provide the fasta files and it will do everything and will make all the accessory information plots from the evolutionary analysis. It will also check for the breakage in the phylogeny and also will perform the repoint analysis.
bioinformatics evolutionary-computation evolutionary-computing pangenome pangenome-clustering pangenome-inference
Last synced: 22 Feb 2025
https://github.com/gauravcodepro/pangenome-single-copy-gene
a single copy gene analysis pangenome which allows for the orthology already computed and allows for the alignment and phylogeny building using three alignment approaches and also allows for the GTRCAT and GTRGAMA model with 1000 bootstrap. To check the file conversion it iterates the first files at the start and see if the number matches
bioinformatics bioinformatics-analysis pangenome pangenome-inference pangenome-pipeline
Last synced: 22 Feb 2025
https://github.com/applicativesystem/rust-pangenome-snatcher
rust pangenome snatcher
bioinformatics genome-analysis genome-analysis-annotation pangenome pangenome-analysis pangenome-inference
Last synced: 16 Dec 2024
https://github.com/sciencegenome/pangenome-snatcher
rust pangenome snatcher
bioinformatics genome-analysis genome-analysis-annotation pangenome pangenome-analysis pangenome-inference
Last synced: 18 Mar 2025
https://github.com/sciencegenome/pangenome-tools
rust deeplearning and segmentation from the aligned reads
bioinformatics genome-analysis genome-analysis-annotation pangenome pangenome-analysis pangenome-inference
Last synced: 18 Mar 2025
https://github.com/sciencegenome/pangenome-harmonic-mean
rust pangenome harmonic mean
bioinformatics genome-bioinformatics pangenome pangenome-alignment pangenome-inference
Last synced: 18 Mar 2025
https://github.com/sciencegenome/pangenome-graph-bed
rust pangenome graph bed
bioinformatics genome-analysis genome-analysis-annotation pangenome pangenome-graph pangenome-inference
Last synced: 18 Mar 2025
https://github.com/applicativesystem/rust-pangenome-harmonic-mean
rust pangenome harmonic mean
bioinformatics genome-bioinformatics pangenome pangenome-alignment pangenome-inference
Last synced: 16 Dec 2024