https://github.com/deepomicslab/SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning

Last synced: 14 Mar 2025

https://github.com/deepomicslab/DeepHost

This is the repository for DeepHost, a phage host prediction tool.

Last synced: 23 Mar 2025

https://github.com/deepomicslab/Ambigram

Detecting complex breakage-fusion-bridge genome rearrangement with Ambigram

Last synced: 14 Mar 2025