Projects in Awesome Lists by VCCRI
A curated list of projects in awesome lists by VCCRI .
https://github.com/vccri/cidr
Clustering through Imputation and Dimensionality Reduction
Last synced: 10 Apr 2025
https://github.com/vccri/sierra
Discover differential transcript usage from polyA-captured single cell RNA-seq data
alternative-polyadenylation alternative-splicing isoforms scrna-seq sierra
Last synced: 10 Apr 2025
https://github.com/vccri/falco
A quick and flexible single-cell RNA-seq processing framework on the cloud
Last synced: 10 Apr 2025
https://github.com/VCCRI/Falco
A quick and flexible single-cell RNA-seq processing framework on the cloud
Last synced: 08 Apr 2025
https://github.com/vccri/ularcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
backsplicing circrna circular-rna rna-seq rna-seq-analysis sequencing-rna splicing-analyses splicing-visualization
Last synced: 10 Apr 2025
https://github.com/vccri/cardiacprofiler
CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers
Last synced: 10 Apr 2025
https://github.com/vccri/vpot
VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.
predictor prioritisation variants
Last synced: 10 Apr 2025
https://github.com/vccri/dv-trio
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.
father-mother-child mendelian-genetics variant-calling variants
Last synced: 10 Apr 2025
https://github.com/vccri/xgsa
XGSA: a statistical method for cross-species gene set analysis
Last synced: 10 Apr 2025
https://github.com/vccri/cidr-examples
Examples relating to the CIDR package.
Last synced: 10 Apr 2025
https://github.com/vccri/starmap
Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual reality
Last synced: 10 Apr 2025
https://github.com/vccri/sctalk
Intercellular communication analysis for scRNA-seq data
intercellular-communication ligand-receptor scrna-seq scrna-seq-analysis
Last synced: 10 Apr 2025
https://github.com/vccri/conanvarvar
ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data
bioinformatics copy-number-variation genomics
Last synced: 10 Apr 2025
https://github.com/vccri/scavenger
A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Last synced: 10 Apr 2025
https://github.com/vccri/atlantool
Command line tool to index and search BAM files by QNAME
Last synced: 10 Apr 2025
https://github.com/vccri/fibroblastintegration
Code related to the integration analysis of cardiac fibroblasts
Last synced: 28 Mar 2025
https://github.com/vccri/spagi
Signalling Pathway Analysis for putative Gene regulatory network Identification
Last synced: 10 Apr 2025
https://github.com/vccri/cardiac-image-analysis
Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy images
Last synced: 28 Mar 2025
https://github.com/vccri/c3
C3: An R package for cross-species compendium-based cell-type identification
Last synced: 28 Mar 2025
https://github.com/vccri/kica
KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells
Last synced: 09 Apr 2025
https://github.com/vccri/ecological_study_asbestos_ard_2022
A 2022 ecological study of asbestos consumption and asbestos related diseases (ARD)
Last synced: 28 Mar 2025
https://github.com/vccri/vscode-devcontainer-dockerfile
Initiate a VS Code dev container from a dockerfile
devcontainer development devops docker dockerfile
Last synced: 16 Mar 2025
https://github.com/vccri/dcm_polygenic_study_2024
A 2024 study on polygenic risk scores and familial inheritance of dilated cardiomyopathy
Last synced: 28 Mar 2025
https://github.com/vccri/lqts-bb-hons24
LQTS BB Honours Project 2024 (itak1): Holter feature detection, heatmap and paired analysis of Holter ECGs
Last synced: 28 Mar 2025
https://github.com/vccri/cmmolecularsignatures
Cardiomyocyte molecular signatures
Last synced: 28 Mar 2025
https://github.com/vccri/from_dels_to_retrogenes
Identify retrocopied genes from whole genome sequencing structural variant clean intron deletions
Last synced: 28 Mar 2025
https://github.com/vccri/variant_calling_and_annotation_pipeline
Scripts to call, annotate and analyse variants for multiple samples of whole genome sequencing (WGS)
Last synced: 28 Mar 2025
https://github.com/vccri/owl
Automated Denoising Application utilising ITV Algorithm and Image Registration
Last synced: 28 Mar 2025
https://github.com/vccri/metadenovo
MetaDenovo : An automated framework to detect de novo mutations from whole genome trio data using cloud computing technology.
Last synced: 28 Mar 2025