Projects in Awesome Lists tagged with mutect2
A curated list of projects in awesome lists tagged with mutect2 .
https://github.com/tdayris/fair_gatk_mutect2
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
fair gatk-bestpractices mutect2 reproducible-workflows snakemake snakemake-workflow variant-calling
Last synced: 16 Jan 2026
https://github.com/sanjaysgk/ipg
Immunopeptidogenomics — cryptic peptide database construction from RNA-seq. An nf-core-style port of the 31-step IPG pipeline (Scull et al. Mol Cell Proteomics 2021), built for the Li and Purcell Labs at Monash University.
bioinformatics cancer-immunotherapy cancer-research cryptic-peptides gatk4 hla immunopeptidogenomics immunopeptidomics mass-spectrometry mhc monash-university mutect2 neoantigens nextflow nf-core pixi reproducible-research rnaseq star-aligner stringtie
Last synced: 18 May 2026
https://github.com/stevekm/mutect2_target_chunking
demo pipeline for testing different data chunking methods for MuTect2
mutect2 nextflow variant-calling
Last synced: 30 Jan 2026
