Projects in Awesome Lists by alexcoppe
A curated list of projects in awesome lists by alexcoppe .
https://github.com/alexcoppe/bio-dockers
:whale: Bio-dockers: dockerized bioinformatic tools
bioinformatics docker genomics ngs
Last synced: 17 Feb 2025
https://github.com/alexcoppe/iwhale
:whale: Dockerized WES pipeline for variants identification in mathced tumor-normal samples
bioinformatics biology docker genomics indels scons snps tumor whole-exome-sequencing
Last synced: 17 Feb 2025
https://github.com/alexcoppe/docker-pyspark
Docker image just to play around with PySpark.
Last synced: 15 May 2025
https://github.com/alexcoppe/covid19.py
🦠See COVID-19 data from the command line
Last synced: 04 Apr 2025
https://github.com/alexcoppe/iseqs
:microscope: A bunch of scripts I use in my Next Generation Sequencing Bioinformatics Analyses
Last synced: 15 May 2025
https://github.com/alexcoppe/iseqsr
:microscope: An R package with functions I use for bioinformatics analyses
Last synced: 15 May 2025
https://github.com/alexcoppe/vcf_to_tsv
Transforms a VCF (variant call format) file to a tab-separated values (.tsv) one
bioinformatics cpp genomics mutations variant-calling vcf
Last synced: 15 May 2025
https://github.com/alexcoppe/compfinance
Various stuff for the Coursera's Introduction to computational finance
Last synced: 15 May 2025
https://github.com/alexcoppe/vcf_annotator
:chart_with_downwards_trend: VCF annotation using SCons
Last synced: 15 May 2025
https://github.com/alexcoppe/number_of_fasta_seqs
:pill: A program to count the number of sequences in a FASTA file
Last synced: 15 May 2025
https://github.com/alexcoppe/ansible-role-pip
:snake: Ansible role for pip installation
Last synced: 15 May 2025
https://github.com/alexcoppe/ansible-role-swift
Ansible role to install Swift programming language in Ubuntu
Last synced: 15 May 2025
https://github.com/alexcoppe/cosmic_snp_filter
:pill: Remove COSMIC SNP variants from a VCF file
Last synced: 15 May 2025
https://github.com/alexcoppe/from_fastq_to_fasta
:pill: A software for converting FASTQ files to FASTA ones
Last synced: 15 May 2025
https://github.com/alexcoppe/filter_by_fathmm
:pill: Filter an annotated VCF based on FATHMM_rankscore from dbNSF
Last synced: 15 May 2025
https://github.com/alexcoppe/genomicpp
A bunch of C++ programs for working with bioinformatics files
bioinformatics biology cpp vcf
Last synced: 15 May 2025