Projects in Awesome Lists tagged with synteny
A curated list of projects in awesome lists tagged with synteny .
https://github.com/tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
allmaps assembly bioinformatics blast comparative-genomics genetic-maps genome-sequencing genomics sequence-alignments synteny variant-calling
Last synced: 14 May 2025
https://github.com/moshi4/pygenomeviz
A genome visualization python package for comparative genomics
bioinformatics comparative-genomics genbank genomics genomics-visualization gff gff3 matplotlib microbial-genomics microbiology python synteny visualization
Last synced: 15 May 2025
https://github.com/tanghaibao/quota-alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
comparative-genomics evolution genomics synteny
Last synced: 21 Mar 2025
https://github.com/lpryszcz/pyscaf
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
genome long-reads reference scaffolding synteny
Last synced: 19 Dec 2024
https://github.com/robaina/pynteny
Query sequence database by HMMs arranged in predefined synteny structure
bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block
Last synced: 19 Mar 2025
https://github.com/kullrich/crbhits
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
bioinformatics dnds dnds-estimation joss kaks last pairwise-comparison r r-package reciprocal-blast-hits synteny
Last synced: 09 Apr 2025
https://github.com/kiranbandi/mcscanx-synteny-visualizer
A visualization tool for viewing MCscanX Synteny Collinearity files (outdated please check description or readme)
d3-visualization d3v4 mcscanx synteny visualisation visualization
Last synced: 13 May 2025
https://github.com/robaina/clinker_server
Set clinker to be run remotely from a server
bioinformatics clinker genomics-visualization synteny
Last synced: 08 Apr 2025