Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by kullrich
A curated list of projects in awesome lists by kullrich .
https://github.com/kullrich/bio-scripts
collection of scripts for bioinformatic analysis
Last synced: 03 Nov 2024
https://github.com/kullrich/kakscalculator2
Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
Last synced: 03 Nov 2024
https://github.com/kullrich/oggmap
oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ages per orthologous group) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Last synced: 03 Nov 2024
https://github.com/kullrich/msa2dist
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
bioconductor-package bioinformatics dnds dnds-estimation iupac kaks msa2dist multiple-sequence-alignment r score-matrix
Last synced: 03 Nov 2024
https://github.com/kullrich/sctei
add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
bioinformatics evolution expression-profiles gene-expression gene-expression-profiles orthofinder phylostratigraphy scrna-seq-analysis sctei seurat seurat-objects
Last synced: 03 Nov 2024
https://github.com/kullrich/dagchainer
Fork of the DAGchainer project https://sourceforge.net/projects/dagchainer
Last synced: 03 Nov 2024
https://github.com/kullrich/crbhits
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
bioinformatics dnds dnds-estimation joss kaks last pairwise-comparison r r-package reciprocal-blast-hits synteny
Last synced: 03 Nov 2024
https://github.com/kullrich/snpless-nf
snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.
Last synced: 03 Nov 2024
https://github.com/kullrich/eurobioc2022_msa2dist
Slide presentation and material for the software demo "Downstream Analysis of Synteny Networks with MSA2dist"
Last synced: 03 Nov 2024
https://github.com/kullrich/kortho
kortho calculates pairwise kmer jaccard distance between all sequences of an AAStringSet
Last synced: 03 Nov 2024
https://github.com/kullrich/korthor
korthoR calculates pairwise kmer jaccard distance between all sequences of an AAStringSet
Last synced: 03 Nov 2024
https://github.com/kullrich/vgwas
Variance Heterogeneity Genome-wide Association Study - Reimplementation
Last synced: 03 Nov 2024
https://github.com/kullrich/treeswitchr
TreeSwitchR visualize phylogenetic trees along chromosomes in R
Last synced: 03 Nov 2024
https://github.com/kullrich/literal-dists
Convert a FASTA alignment with ambiguous nucleotides to literal distance matrix
Last synced: 03 Nov 2024
https://github.com/kullrich/dist2bionjs
Use stdin distance matrix to calculate bionjs
Last synced: 03 Nov 2024
https://github.com/kullrich/korthocpp
korthoCPP calculates pairwise kmer jaccard distance between two peptide fasta files
Last synced: 03 Nov 2024
https://github.com/kullrich/bam2iupac
IUPAC FASTA extraction from BAM files to stdout
Last synced: 03 Nov 2024