Projects in Awesome Lists tagged with dnds-estimation
A curated list of projects in awesome lists tagged with dnds-estimation .
https://github.com/chasewnelson/snpgenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
diversity-measurement dnds dnds-estimation evolution evolutionary-parameters fasta-sequences molecular-evolution natural-selection nei-gojobori next-generation-sequencing nucleotide nucleotide-diversity perl population-genetics sequence-analysis snp-report substitution-rate vcf vcf-files
Last synced: 23 Mar 2025
https://github.com/drostlab/orthologr
Genome wide orthology inference and dNdS estimation
biomartr blast blast-searches codon-alignment comparative comparative-genomics comparative-genomics-studies comparing-genomes dnds-estimation entire-genomes genomics genomics-studies orthologous-genes orthology-inference proteome r retrieve-genomes sequence-alignment sequence-alignments species
Last synced: 01 May 2025
https://github.com/chasewnelson/OLGenie
Program for estimating dN/dS in overlapping genes (OLGs)
dnds dnds-estimation molecular-evolution natural-selection nei-gojobori neutral-evolution overlapping overlapping-genes perl positive-selection purifying-selection selection
Last synced: 23 Mar 2025
https://github.com/kullrich/msa2dist
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
bioconductor-package bioinformatics dnds dnds-estimation iupac kaks msa2dist multiple-sequence-alignment r score-matrix
Last synced: 02 Apr 2025
https://github.com/kullrich/crbhits
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
bioinformatics dnds dnds-estimation joss kaks last pairwise-comparison r r-package reciprocal-blast-hits synteny
Last synced: 09 Apr 2025