Projects in Awesome Lists tagged with codon-alignment
A curated list of projects in awesome lists tagged with codon-alignment .
https://github.com/drostlab/orthologr
Genome wide orthology inference and dNdS estimation
biomartr blast blast-searches codon-alignment comparative comparative-genomics comparative-genomics-studies comparing-genomes dnds-estimation entire-genomes genomics genomics-studies orthologous-genes orthology-inference proteome r retrieve-genomes sequence-alignment sequence-alignments species
Last synced: 17 Dec 2025
https://github.com/vinuesa/get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
bash clock-hypothesis codon-alignment core-genome genomics markers maximum-likelihood microbiology orthologues perl phylogenetic-trees phylogenetics phylogenomics phylogenomics-pipeline pipeline population-genetics r recombination species-delimitation species-trees
Last synced: 11 Feb 2026
https://github.com/lkremer/msa_trimmer
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
aligned-regions alignment-trimming cds-alignment codeml codon-alignment molecular-evolution msa-trimmer multiple-sequence-alignment paml phylogenetics sequence-alignment trimmer trimming
Last synced: 06 Jul 2025
