https://github.com/vinuesa/get_phylomarkers

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

bash clock-hypothesis codon-alignment core-genome genomics markers maximum-likelihood microbiology orthologues perl phylogenetic-trees phylogenetics phylogenomics phylogenomics-pipeline pipeline population-genetics r recombination species-delimitation species-trees

Last synced: 11 Feb 2026