Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by Robaina
A curated list of projects in awesome lists by Robaina .
https://github.com/robaina/brendapyrser
A Python parser for the BRENDA database
biochemistry bioinformatics brenda computational-biology enzyme enzyme-kinetics metabolism python
Last synced: 01 Nov 2024
https://github.com/robaina/pynteny
Query sequence database by HMMs arranged in predefined synteny structure
bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block
Last synced: 27 Oct 2024
https://github.com/robaina/genbankpy
Tools to download, parse and filter GenBank files
bioinformatics computational-biology genbank genomics ncbi python sequencing
Last synced: 27 Oct 2024
https://github.com/robaina/filtersam
Tools to filter SAM/BAM files by percent identity and percent of matched sequence
alignment bioinformatics computational-biology genomics python samtools sequence-alignment
Last synced: 27 Oct 2024
https://github.com/robaina/netflowpy
A python tool to optimize chemical concentration trajectories in network-based chemical systems
alternative-optima bioinformatics chemical-networks chemistry computational-biology dynamical-systems linear-programming metabolic-networks metabolism optimization python
Last synced: 04 Nov 2024
https://github.com/robaina/parallelbam
Tools to parallelize operations on large BAM files
Last synced: 27 Oct 2024
https://github.com/robaina/jplaceparser
A python parser for jplace (evolutionary placement) files
bioinformatics computational-biology evolutionary-algorithms phylogenetic-trees phylogenetics python
Last synced: 04 Nov 2024
https://github.com/robaina/clinker_server
Set clinker to be run remotely from a server
bioinformatics clinker genomics-visualization synteny
Last synced: 04 Nov 2024
https://github.com/robaina/metatag
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
bioinformatics evolutionary-placement function-annotation marine-microbiology metagenomics metagenomics-toolkit microbial-ecology taxonomy-assignment
Last synced: 04 Nov 2024
https://github.com/robaina/pathwayenrichment
Tools to perform a permutation-based cell pathway analysis
Last synced: 27 Oct 2024
https://github.com/robaina/googletrends
A visualization of current google trends on a world map using WebGL Earth
Last synced: 04 Nov 2024
https://github.com/robaina/venuspentagram
A depiction of the Venus Pentagram
Last synced: 04 Nov 2024
https://github.com/robaina/metat2genome
Tools to align and count metatranscriptome data onto reference genome
Last synced: 04 Nov 2024
https://github.com/robaina/ipywidgets_static_example
An interactive figure made with matplotlib and ipywidgets_static
Last synced: 04 Nov 2024
https://github.com/robaina/simongame
A web version of the Simon memory game
Last synced: 04 Nov 2024
https://github.com/robaina/dokdonia
Source code employed in the study: Gene expression response to temperature acclimation in a model photoheterotrophic marine flavobacterium
differential-expression dokdonia temperature transcription
Last synced: 04 Nov 2024
https://github.com/robaina/cayley-dickson-calculator
A calculator to operate on Cayley-Dickson Algebras written in JavaScript
Last synced: 04 Nov 2024
https://github.com/robaina/oblatespheroidal
A 2D representation of the oblate spheroidal coordinate system. The focal distance of the inner spheroid can be changed.
Last synced: 04 Nov 2024
https://github.com/robaina/modeloeei
Modelo aplicación web para la enseñanza en secundaria de las Especies Exóticas Invasoras
agent-based-modeling ecology education high-school invasive-species
Last synced: 04 Nov 2024
https://github.com/robaina/functionplotter
A web app to plot univariate functions
Last synced: 04 Nov 2024
https://github.com/robaina/uniprot
Python code to parse the Uniprot database
Last synced: 04 Nov 2024
https://github.com/robaina/ayumugame
Memory game based on Chimp Ayumu's game
Last synced: 04 Nov 2024
https://github.com/robaina/crucerostenerife
Calendario interactivo de llegadas de cruceros al puerto de Santa Cruz de Tenerife
Last synced: 04 Nov 2024
https://github.com/robaina/phycogem
Modeling phycospheric metabolic interactions in python
bioinformatics genome-scale-metabolic-model marine-microbial-ecology metagenomics phycosphere
Last synced: 27 Oct 2024
https://github.com/robaina/mandeltravel
Travelling across the Mandelbrot set
Last synced: 04 Nov 2024
https://github.com/robaina/marinegems
A repository of reference genome-scale metabolic models of marine microbes
marine-biology metabolic-models microbial-communities microbial-ecology systems-biology
Last synced: 04 Nov 2024
https://github.com/robaina/fluxorders
GitHub repository of the article: Flux-based hierarchical organization of Escherichia coli's metabolic network
Last synced: 04 Nov 2024