Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with microbial-ecology
A curated list of projects in awesome lists tagged with microbial-ecology .
https://github.com/franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
bioinformatics computational-biology flux-balance-analysis genome-scale-metabolic-model gut-microbiome mags metabolic-modeling metabolic-models metabolism metagenome-assembled-genomes metagenomics microbial-ecology microbiome snakemake systems-biology
Last synced: 07 Nov 2024
https://github.com/robaina/metatag
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
bioinformatics evolutionary-placement function-annotation marine-microbiology metagenomics metagenomics-toolkit microbial-ecology taxonomy-assignment
Last synced: 22 Dec 2024
https://github.com/llnl/2022_dvrfs_microbiome
Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
groundwater groundwater-flow hydraulic-connectivity microbial-communities microbial-community-assembly microbial-ecology microbiome regional-scale subsurface
Last synced: 11 Nov 2024
https://github.com/robaina/marinegems
A repository of reference genome-scale metabolic models of marine microbes
marine-biology metabolic-models microbial-communities microbial-ecology systems-biology
Last synced: 22 Dec 2024