Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by brentp
A curated list of projects in awesome lists by brentp .
https://github.com/brentp/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
coverage depth exome genome hacktoberfest nim nim-lang sequencing wgs
Last synced: 02 Aug 2024
https://github.com/brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
bioinformatics cython genomics htslib vcf
Last synced: 02 Aug 2024
https://github.com/brentp/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
annotation bioinformatics genomics vcf
Last synced: 02 Aug 2024
https://github.com/brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
bioinformatics cancer-genomics genomics
Last synced: 02 Aug 2024
https://github.com/brentp/smoove
structural variant calling and genotyping with existing tools, but, smoothly.
genomics lumpy structural-variation
Last synced: 02 Aug 2024
https://github.com/brentp/goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
bioinformatics coverage depth genomics golang
Last synced: 02 Aug 2024
https://github.com/brentp/slurmpy
submit jobs to slurm with quick-and-dirty python
Last synced: 03 Aug 2024
https://github.com/brentp/vcfgo
a golang library to read, write and manipulate files in the variant call format.
Last synced: 02 Aug 2024
https://github.com/brentp/bsub
python wrapper to submit jobs to bsub (and later qsub)
Last synced: 04 Aug 2024
https://github.com/brentp/hts-zig
ziglang + htslib
bioinformatics genomics hacktoberfest htslib zig ziglang
Last synced: 03 Aug 2024