Projects in Awesome Lists tagged with prokaryotes
A curated list of projects in awesome lists tagged with prokaryotes .
https://github.com/RickGelhausen/HRIBO
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
bioinformatics prokaryotes ribosome-profiling snakemake
Last synced: 20 Nov 2024
https://github.com/tmsincomb/deepvcf
Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".
deep-learning deeplearning prokaryotes prokaryotic-genomes variant-call-format variant-calling vcf
Last synced: 06 Mar 2025
