Ecosyste.ms: Awesome

https://github.com/meeranhussain/blast_gnu_parallel

BLAST searches in parallel using GNU Parallel

assembly bash blast blastn genome-assembly python slurm-cluster

Last synced: 12 Oct 2024

https://github.com/meeranhussain/genome_assembly

Bash scripts for genome assembly using ONT and Illumina datasets.

Last synced: 10 Nov 2024

https://github.com/meeranhussain/commandhub

This GitHub repository provides a comprehensive collection of commands and scripts commonly used while analyzing sequencing data.

analysis bash bioinformatics commands ngs

Last synced: 10 Nov 2024

https://github.com/meeranhussain/population_genomic_analysis

A repository for efficient population genomic analysis using Snakemake workflow.

genome-analysis ngs ngs-analysis population population-genomics rprogramming snakemake-workflow variant-calling whole

Last synced: 10 Nov 2024

https://github.com/meeranhussain/microbiome_analysis

Comparative study of soil microbiome using QIIME2

16s-rrna metagenomic-analysis microbiome qiime2

Last synced: 10 Nov 2024

https://github.com/meeranhussain/quicktips

Quick and practical tips for better server/HPC management and terminal usage.

Last synced: 10 Nov 2024

https://github.com/meeranhussain/rnaseq_deseq2_snakemake

Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline

deseq2-analysis differential-gene-expression rna rna-seq-analysis rna-seq-pipeline snakemake-workflow star-aligner

Last synced: 10 Nov 2024

https://github.com/meeranhussain/rnaseq_degseq_snakemake_no-replicates

Workflow for differential gene expression analysis for non-replicate samples using DEGseq

differential-gene-expression rna-seq-analysis rna-seq-pipeline snakemake-workflow star-aligner

Last synced: 10 Nov 2024