Projects in Awesome Lists by ClavelLab
A curated list of projects in awesome lists by ClavelLab .
https://github.com/clavellab/mimic
Minimal Microbial Consortia creation tools
Last synced: 22 Apr 2025
https://github.com/clavellab/genome-assembly
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
bacterial-genomes genome-assembly snakemake snakemake-workflows
Last synced: 12 May 2026
https://github.com/clavellab/maldipickr
Dereplicate And Cherry-pick Mass Spectrometry Spectra
cherry-pick dereplication maldi-tof-ms r r-packages rstats
Last synced: 10 Apr 2025
https://github.com/clavellab/mibc
The Mouse Intestinal Bacterial Collection
Last synced: 19 Mar 2026
https://github.com/clavellab/maldipickrgui
Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra with the 'maldipickr' package.
Last synced: 13 Sep 2025
https://github.com/clavellab/template-dereplication-workflow
Workflow template to dereplicate and cherry-pick mass spectrometry spectra
Last synced: 16 Mar 2025
https://github.com/clavellab/pocpbenchmark_manuscript
Code and manuscript for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)
Last synced: 06 Jan 2026
https://github.com/clavellab/pocpbenchmark
Nextflow workflow for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)
Last synced: 27 Jan 2026
https://github.com/clavellab/scd
Anaerobic Single Cell Dispensing (SCD) for anaerobic cultivation of bacteria from complex samples
Last synced: 31 Jan 2026
https://github.com/clavellab/maldipickr_manuscript
Worfklow for the data analysis in the maldipickr manuscript
Last synced: 09 Jul 2025
https://github.com/clavellab/github-repo-stats
Statistics aggregation for Github repositories for NFDI4Microbiota KPI
Last synced: 19 Mar 2026