Projects in Awesome Lists tagged with network-inference

https://github.com/saeyslab/nichenetr

NicheNet: predict active ligand-target links between interacting cells

cell-cell-communication data-integration gene-expression intercellular-communication ligand-receptor ligand-target network-inference rna-seq single-cell-omics single-cell-rna-seq

Last synced: 30 Apr 2025

https://github.com/juliadynamics/associations.jl

Algorithms for quantifying associations, independence testing and causal inference from data.

associations causal-graphs causal-inference conditional-mutual-information cross-mapping distance-correlation entropy hacktoberfest independence-testing julia julia-language mutual-information network-inference partial-mutual-information predictive-asymmetry surrogate-data time-series transfer-entropy

Last synced: 04 Apr 2025

https://github.com/JuliaDynamics/Associations.jl

Algorithms for quantifying associations, independence testing and causal inference from data.

associations causal-graphs causal-inference conditional-mutual-information cross-mapping distance-correlation entropy hacktoberfest independence-testing julia julia-language mutual-information network-inference partial-mutual-information predictive-asymmetry surrogate-data time-series transfer-entropy

Last synced: 04 May 2025

https://github.com/pinellolab/dictys

Context specific and dynamic gene regulatory network reconstruction and analysis

dynamic-network gene-regulatory-network network-analysis network-inference network-visualization single-cell-analysis single-cell-multiomics single-cell-network

Last synced: 10 May 2025

https://github.com/shellrow/netdev

Cross-platform library for network interface and gateway. Written in Rust.

gateway network network-inference rust rust-crate rust-library

Last synced: 12 Apr 2025

https://github.com/fabian-sp/gglasso

A Python package for General Graphical Lasso computation

graphical-lasso graphical-models latent-variable-models network-inference optimization

Last synced: 06 Apr 2025

https://github.com/fabian-sp/GGLasso

A Python package for General Graphical Lasso computation

graphical-lasso graphical-models latent-variable-models network-inference optimization

Last synced: 01 May 2025

https://github.com/OceaneCsn/DIANE

Dashboard for the Inference and Analysis of Networks from Expression data

analysis-workflows gene-expression network-inference r

Last synced: 04 Dec 2024

https://github.com/paulveillard/cybersecurity-networking

An ongoing curated collection of awesome software, libraries, frameworks, talks & videos, best practices, learning tutorials and important practical resources about networking in cybersecurity

network network-analysis network-automation network-inference network-programming network-scripting network-security network-security-books network-server network-service network-tools networking networking-application networking-concepts networking-labs networks

Last synced: 10 Apr 2025

https://github.com/CABSEL/SINCERITIES

SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.

network-inference single-cell-analysis

Last synced: 09 Apr 2025

https://github.com/callahantiff/owl-nets

Transforming OWL for statistical learning

hacktoberfest knowledge-graph network-inference ontologies semantic-web sparql-query web-ontology-language

Last synced: 14 Feb 2025

https://github.com/le-ander/msc_bioinfo-network_inference

Network inference for gene expression using gradient matching. Final research project as part of the MSc in Bioinformatics and Theorectical Systems Biology at Imperial College London 2016/2017.

bioinformatics gaussian-processes gene-expression gradient-matching julia network-inference systems-biology