https://github.com/cometsong/commentframe.vim

Add Comments in Frames to the file you're editing, or Comments aligned on the Right side of a line. Customizable!

comment vim vim-plugin

Last synced: 09 Jul 2025

https://github.com/cometsong/ferm.vim

Vim syntax highlighting for filetype "ferm".

ferm iptables syntax vim vim-syntax

Last synced: 09 Jul 2025

https://github.com/cometsong/vimfiles

All options, plugins, keymaps, submodules for the mightiest editor in the world.

neovim nvim vim vimfiles vimrc

Last synced: 22 Feb 2026

https://github.com/cometsong/jaxid_generator

Microbiome-Core JAXid tracking ID code generator and view/search web app

django generator lims microbiome tracking web-application

Last synced: 15 May 2026

https://github.com/cometsong/bufkill.vim

Git mirror of 'bufkilll.vim'. http://www.vim.org/scripts/script.php?script_id=1147

Last synced: 30 Jan 2026

https://github.com/cometsong/atac_seq_nxf

ATAC_Seq Analysis Pipeline using Nextflow framework.

atac-seq bioinformatics nextflow pipeline

Last synced: 01 Jan 2026

https://github.com/cometsong/alignchips.vim

Fork of Dr Chip's Align.vim plugin (vimscript #294)

Last synced: 02 Jan 2026

https://github.com/cometsong/ma-genta

Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.

annotation bioinformatics genome microbes microbiome ncbi-blast pipeline predictors probe sequence targeted

Last synced: 14 Mar 2025

https://github.com/cometsong/sv_paired_bam_nxf

Pipeline to analyze structural variants producing VCF files, then merge them and annotate if in Exon.

Last synced: 25 Jul 2025

https://github.com/cometsong/ngs_wrapper_scripts

NGS wrapper scripts written to simplify running NGS analysis programs.

Last synced: 06 Sep 2025

https://github.com/cometsong/rcfiles

Snagged idea from dotfiles repos. Includes many option files, aliases, and Makefile install script.

Last synced: 14 Mar 2025

https://github.com/cometsong/automysqlbackup

A fork for further development of AutoMySQLBackup from sourceforge. http://sourceforge.net/projects/automysqlbackup/

Last synced: 28 Oct 2025

https://github.com/cometsong/flow_flash_assembler

Paired Sequence Assembler using Flowcraft/Nextflow/Deploit

flowcraft nextflow nextflow-pipeline sequence-assembler

Last synced: 15 Oct 2025

https://github.com/cometsong/visincr.vim

Dr. Chip's VisIncr and CalUtil plugins combined

Last synced: 29 Jan 2026

https://github.com/cometsong/cometsong.github.com

The Pages of All Cool Times

Last synced: 08 Feb 2026

https://github.com/cometsong/miraculous

MIRAculous is a graphical interface for the sequence assembler MIRA.

Last synced: 10 Feb 2026

https://github.com/cometsong/contained

Various Dockerfile's for various applications....

containers docker dockerfiles singularity

Last synced: 19 May 2026

https://github.com/cometsong/quact_db_mbiome

QuaCT :: Quality Control Tracking DB, for Sequencer Runs and Samples

Last synced: 13 Feb 2026

https://github.com/cometsong/autocomplpop.vim

A git copy of vim-autocomplpop so I can submodule it. (http://www.vim.org/scripts/script.php?script_id=1879) (https://bitbucket.org/ns9tks/vim-autocomplpop/)

Last synced: 01 Jan 2026

https://github.com/cometsong/sixteens_nxf

16S Microbiome Analysis Pipeline. This version written in Nextflow.

16s microbiome microbiome-analysis nextflow pipeline

Last synced: 14 Mar 2025

https://github.com/cometsong/sequencing_misc_scripts

Miscellaneous scripts I've written for use with results of genome/etc nucleotide sequencing.

Last synced: 14 Mar 2025

https://github.com/cometsong/mbiome_pipelines

Microbiome Pipeline framework; for many types of pipes and their iterations.

Last synced: 03 Jul 2025

https://github.com/cometsong/otu_db

Store results of 16S OTU clsuters to track and compare and analyze.

16s db otus python3

Last synced: 22 May 2026

https://github.com/cometsong/gbxfr

Globus transfer script

globus transfer

Last synced: 14 Mar 2025

https://github.com/cometsong/ln-tree

Create softlinks of all files in one path into another. (e.g. ln /usr/local/APP /usr/local/)

Last synced: 17 Jun 2025

https://github.com/cometsong/mbiome_seqrun_qc

List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.

16s 16s-rrna flask microbiome mwgs ngs-pipeline python3 qc sequencing

Last synced: 21 May 2026

https://github.com/cometsong/qinx

qstat Info from full XML output, parseable by job owner or job name, etc.

Last synced: 14 Mar 2025

https://github.com/cometsong/gbrs_nxf

Analyze RNAseq with GBRS; Nextflow pipeline.

Last synced: 02 Jan 2026