Projects in Awesome Lists by NYXFLOWER

https://github.com/nyxflower/tip

TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Eﬀect Prediction (GRL@NeurIPS, 2019)

biography deep-learning drug gcn graph-embedding graph-neural-network graph-representation-learning knowledge-graph link-prediction multi-relational nerual-network polypharmacy protein pytorch pytorch-implementation side-effects tensor-factorization

Last synced: 28 Oct 2024

https://github.com/nyxflower/gripnet

GripNet: Graph Information Propagation on Supergraph for Heterogeneous Graphs (PatternRecognit, 2023)

data-integration graph-neural-networks heterogeneous-graph interconnected-graph link-prediction node-classification pytorch

Last synced: 28 Oct 2024

https://github.com/nyxflower/aprile

APRILE: A python library for exploring Adverse Polypharmacy Reaction using Intelligent Learner and Explainer

adverse-drug-reaction bioinformatics biomedicine explainable-ai graph-neural-networks machine-learning pytorch side-effect-mechanism

Last synced: 28 Oct 2024

https://github.com/nyxflower/aprile-exp

This is the repository for reproducing results in "APRILE: Exploring the Molecular Mechanisms of Drug Side Effects with Explainable Graph Neural Networks".

drug-target-interactions explainable-ai gene-gene gene-ontology gnn side-effects sparsity-optimization

Last synced: 11 Oct 2024

https://github.com/nyxflower/upsr

Predicting the enzymatic functions of protein structures

Last synced: 11 Oct 2024

https://github.com/nyxflower/ladybug

An efficient web-based Code Similarity Detection tool with report generator

css java maven similarity-detection sql web-based-application

Last synced: 11 Oct 2024

https://github.com/nyxflower/drugdiscovery

An explainable inductive learning model on gene regulatory and toxicogenomic knowledge graph (under development...)

drug-design drug-discovery drug-repurposing explainable-ml gene-regulatory-networks gnn heterogeneous-graph inductive-learning knowledge-graph molecular-mechanics new-dataset predictive-models systems-biology

Last synced: 11 Oct 2024

https://github.com/nyxflower/butterfly-voice-changing-bowtie

Butterfly Voice Changing Bowtie (BVCB), simple Sound regulator/simulator（PureData Implementation）

puredata sound-generators speech-processing voice-changer

Last synced: 11 Oct 2024

https://github.com/nyxflower/aprile-pred

PoSe-Model: A simplified TIP model for drug side effect prediction (Under development...)

Last synced: 11 Oct 2024

https://github.com/nyxflower/pj_gcn

Reproduce the result of Decagon

Last synced: 11 Oct 2024

https://github.com/nyxflower/machine-learning

Notes and implementations for fundamental machine learning

classification-algorithm discriminant-model generative-model machine-learning matrix-factorization regression-algorithms

Last synced: 11 Oct 2024

https://github.com/nyxflower/mosaics-cuda-openmp

Simple image mosaic command line too (CUDA-OpenMP-C Implementation)

c cuda gpu-programming mosaic mosaic-images openmp parallel-computing parallel-processing

Last synced: 11 Oct 2024

https://github.com/nyxflower/notes-and-examples-on-natural-language-processing

Introduce basic nlp tasks and methods with examples

language-modelling named-entity-recognition neural-language-modelling nlp-machine-learning notes python text-classification text-processing

Last synced: 11 Oct 2024

https://github.com/nyxflower/algorithmstudy

Last synced: 11 Oct 2024

https://github.com/nyxflower/metase-ml

A pipeline for predicting drug response via a novel tensor-contraction based ML model and GEM simulations

Last synced: 11 Oct 2024

Ecosyste.ms: Awesome