Projects in Awesome Lists by tbepler
A curated list of projects in awesome lists by tbepler .
https://github.com/tbepler/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
deep-learning language-model protein-embedding protein-modeling protein-representation-learning protein-sequence protein-structure pytorch recurrent-neural-networks
Last synced: 10 Apr 2025
https://github.com/tbepler/topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
cnn cryo-em cryoem denoising machine-learning object-detection particle-picking positive-unlabeled pytorch topaz topaz-denoise topaz-em
Last synced: 08 Apr 2025
https://github.com/tbepler/prose
Multi-task and masked language model-based protein sequence embedding models.
deep-learning language-model protein-embedding protein-sequences representation-learning sequence-embedding
Last synced: 06 Jan 2025
https://github.com/tbepler/spatial-vae
Source code for "Explicitly disentangling image content from translation and rotation with spatial-VAE" - NeurIPS 2019
Last synced: 06 Jan 2025
https://github.com/tbepler/lrpage
Java LR(1) Parser Generator which outputs parsers as Java source code
Last synced: 02 Apr 2025
https://github.com/tbepler/pwm-benchmarking
Benchmarking position weight matrix implementations in C
Last synced: 02 Apr 2025
https://github.com/tbepler/bayesian-regression
Matlab implementations of various regression methods
Last synced: 02 Apr 2025
https://github.com/tbepler/maximum-longevity
Modelling of longevity data from the International Database on Longevity (http://www.supercentenarians.org/)
Last synced: 02 Apr 2025
https://github.com/tbepler/telepath
Mid/low-level C++ template linear algebra library built on BLAS and LAPACK
Last synced: 02 Apr 2025
https://github.com/tbepler/dream-tfbs-prediction-challenge-conference-round
Last synced: 02 Apr 2025
https://github.com/tbepler/c-patternsearch
C utilities and optimization algorithms
Last synced: 02 Apr 2025
https://github.com/tbepler/transpose
Command line utility for transposing the rows and colums of files.
Last synced: 02 Apr 2025
https://github.com/tbepler/ml-cpp
Machine learning package implemented in C++. Built on the Eigen linear algebra library.
Last synced: 02 Apr 2025
https://github.com/tbepler/mess
MESS (Motif Enrichment in Sequence Sets) is a tool for finding enrichment of sequence motifs in sets of sequences using a GSEA based method.
Last synced: 02 Apr 2025