Projects in Awesome Lists tagged with graph-transformer
A curated list of projects in awesome lists tagged with graph-transformer .
https://github.com/graphdeeplearning/graphtransformer
Graph Transformer Architecture. Source code for "A Generalization of Transformer Networks to Graphs", DLG-AAAI'21.
aaai attention graph-deep-learning graph-neural-networks graph-transformer transformer transformer-networks transformers
Last synced: 28 Nov 2024
https://github.com/rampasek/GraphGPS
Recipe for a General, Powerful, Scalable Graph Transformer
graph-neural-network graph-representation-learning graph-transformer long-range-dependence
Last synced: 28 Nov 2024
https://github.com/daiquocnguyen/Graph-Transformer
Universal Graph Transformer Self-Attention Networks (TheWebConf WWW 2022) (Pytorch and Tensorflow)
graph-classification graph-deep-learning graph-embeddings graph-machine-learning graph-neural-networks graph-representation-learning graph-transformer node-embeddings self-attention text-classification transformer transformer-models
Last synced: 27 Mar 2025
https://github.com/qitianwu/DIFFormer
The official implementation for ICLR23 spotlight paper "DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusion"
attention diffusion diffusion-equation geometric-deep-learning graph-neural-networks graph-transformer iclr2023 image-classification large-graph node-classification pytorch pytorch-geometric pytorch-geometric-temporal spatial-temporal-forecasting text-classification transformer
Last synced: 27 Mar 2025
https://github.com/borgwardtlab/sat
Official Pytorch code for Structure-Aware Transformer.
graph-neural-networks graph-representation-learning graph-transformer icml-2022
Last synced: 09 Apr 2025
https://github.com/vijaydwivedi75/gnn-lspe
Source code for GNN-LSPE (Graph Neural Networks with Learnable Structural and Positional Representations), ICLR 2022
attention geometric-deep-learning gnn gnn-lspe graph-deep-learning graph-neural-networks graph-representation-learning graph-transformer graphs lspe message-passing molecules positional-encoding representation-learning transformer-networks transformers
Last synced: 03 Apr 2025
https://github.com/lsj2408/transformer-m
[ICLR 2023] One Transformer Can Understand Both 2D & 3D Molecular Data (official implementation)
general-purpose-molecular-model graph-neural-network graph-transformer molecular-modeling molecule transformer
Last synced: 10 May 2025
https://github.com/XuhanLiu/DrugEx
Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology
cheminformatics deep-learning graph-transformer multi-objective-optimization reinforcement-learning
Last synced: 29 Jan 2025
https://github.com/vijaydwivedi75/lrgb
Long Range Graph Benchmark, NeurIPS 2022 Track on D&B
graph-benchmark graph-datasets graph-neural-networks graph-representation-learning graph-transformer long-range long-range-dependence
Last synced: 20 Dec 2024
https://github.com/soda-inria/carte
Repository for CARTE: Context-Aware Representation of Table Entries
classification data-science graph-transformer machine-learning regression transformers
Last synced: 12 Apr 2025
https://github.com/JinheonBaek/GMT
Official Code Repository for the paper "Accurate Learning of Graph Representations with Graph Multiset Pooling" (ICLR 2021)
graph graph-classification graph-multiset-pooling graph-multiset-transformer graph-neural-networks graph-pooling graph-reconstruction graph-representation graph-representation-learning graph-transformer pytorch
Last synced: 28 Nov 2024
https://github.com/graph-0/rgtn-nie
Implementation for the paper: Representation Learning on Knowledge Graphs for Node Importance Estimation
Last synced: 27 Apr 2025
https://github.com/borgwardtlab/pst
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
evolutionary-scale-modeling graph-transformer protein-representation-learning protein-structure
Last synced: 21 Nov 2024
https://github.com/thunlp-mt/get
This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).
affinity-prediction graph-transformer unified-molecules
Last synced: 14 Apr 2025
https://github.com/borgwardtlab/neuralwalker
Official Pytorch implementation of NeuralWalker
graph-neural-networks graph-representation-learning graph-transformer random-walk state-space-models
Last synced: 14 Apr 2025
https://github.com/willyfh/graph-transformer
An unofficial implementation of Graph Transformer (Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classification) - IJCAI 2021
deep-learning gnn graph-deep-learning graph-neural-networks graph-transformer neural-networks pytorch
Last synced: 02 Apr 2025
https://github.com/snap-research/largegt
Graph Transformers for Large Graphs
gnn graph-transformer machinelearning transformer
Last synced: 14 Apr 2025
https://github.com/meakbiyik/graphtester
Test graph isomorphism with 1-WL for different graph classes and labelings
gnn graph graph-isomorphism graph-transformer python weisfeier-leman weisfeiler-lehman
Last synced: 12 Apr 2025
https://github.com/burcgokden/power-law-graph-transformer
Implementation of Power Law Graph Transformer for Machine Translation and Representation Learning.
attention deep-learning graph-neural-network graph-transformer machine-learning machine-learning-algorithms machine-learning-model machine-translation neural-network plga plgt power-law power-law-graph-transformer representation-learning residual-networks tensorflow tensorflow-text transformer
Last synced: 14 Mar 2025
