Projects in Awesome Lists tagged with knowledge-graph-embeddings

https://github.com/accenture/ampligraph

Python library for Representation Learning on Knowledge Graphs https://docs.ampligraph.org

graph-embeddings graph-representation-learning knowledge-graph knowledge-graph-embeddings machine-learning relational-learning representation-learning

Last synced: 13 May 2025

https://github.com/Accenture/AmpliGraph

Python library for Representation Learning on Knowledge Graphs https://docs.ampligraph.org

graph-embeddings graph-representation-learning knowledge-graph knowledge-graph-embeddings machine-learning relational-learning representation-learning

Last synced: 03 Apr 2025

https://github.com/pykeen/pykeen

🤖 A Python library for learning and evaluating knowledge graph embeddings

cuda deep-learning knowledge-base-completion knowledge-graph-embeddings knowledge-graphs link-prediction machine-learning pykeen python torch

Last synced: 25 Apr 2025

https://github.com/bramblexu/knowledge-graph-learning

A curated list of awesome knowledge graph tutorials, projects and communities.

knowledge-graph knowledge-graph-embeddings relation-extraction

Last synced: 28 Jan 2026

https://github.com/BrambleXu/knowledge-graph-learning

A curated list of awesome knowledge graph tutorials, projects and communities.

knowledge-graph knowledge-graph-embeddings relation-extraction

Last synced: 22 Apr 2025

https://github.com/gnn4dr/DRKG

A knowledge graph and a set of tools for drug repurposing

dgl dgl-ke drug-repurposing graph-neural-networks knowledge-graph knowledge-graph-embeddings

Last synced: 19 Nov 2025

https://github.com/zjukg/NeuralKG

[Tool] For Knowledge Graph Representation Learning

deep-learning knowledge-graph knowledge-graph-completion knowledge-graph-embeddings link-prediction machine-learning neuralkg python pytorch-lightning

Last synced: 09 May 2025

https://github.com/daiquocnguyen/ConvKB

A Novel Embedding Model for Knowledge Base Completion Based on Convolutional Neural Network (NAACL 2018) (Pytorch and Tensorflow)

convolutional-neural-network fb15k237 knowledge-base-completion knowledge-base-embeddings knowledge-graph-completion knowledge-graph-embeddings knowledge-graphs link-prediction pytorch-implementation wn18rr

Last synced: 21 Jul 2025

https://github.com/Mehran-k/SimplE

SimplE Embedding for Link Prediction in Knowledge Graphs

knowledge-base knowledge-base-completion knowledge-graph knowledge-graph-completion knowledge-graph-embeddings knowledgebase link-prediction relational-learning starai statistical-relational-learning tensor-factorization tensorflow

Last synced: 29 Apr 2025

https://github.com/1049451037/GCN-Align

Code of the paper: Cross-lingual Knowledge Graph Alignment via Graph Convolutional Networks.

entity-alignment knowledge-graph-embeddings

Last synced: 02 Apr 2025

https://github.com/1049451037/gcn-align

Code of the paper: Cross-lingual Knowledge Graph Alignment via Graph Convolutional Networks.

entity-alignment knowledge-graph-embeddings

Last synced: 10 Apr 2025

https://github.com/raphaelsty/mkb

Knowledge Base Embedding By Cooperative Knowledge Distillation

distillation embeddings graph graph-embedding knowledge knowledge-graph knowledge-graph-embeddings machine-learning mkb pytorch triplets wn18

Last synced: 11 Oct 2025

https://github.com/zjunlp/knn-kg

[NLPCC 2023] Reasoning Through Memorization: Nearest Neighbor Knowledge Graph Embeddings with Language Models

fb15k-237 fb15k237 inductive inductive-reasoning kg kge knn knn-kge knnkg knowledge-graph knowledge-graph-embeddings machine-learning semiparametric-models transductive transductive-reasoning wn18rr

Last synced: 25 Oct 2025

https://github.com/jinzhuoran/cogkge

CogKGE: A Knowledge Graph Embedding Toolkit and Benchmark for Representing Multi-source and Heterogeneous Knowledge. ACL 2022

knowledge-graph-embeddings

Last synced: 12 Mar 2026

https://github.com/dwslab/jrdf2vec

A high-performance Java Implementation of RDF2Vec

cli-app embeddings generating-walks knowledge-graph-embeddings rdf2vec semantic-web

Last synced: 14 Jan 2026

https://github.com/pykeen/benchmarking

📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework" (http://arxiv.org/abs/2006.13365)

benchmarking knowledge-graph-embeddings knowledge-graphs machine-learning

Last synced: 27 Jun 2025

https://github.com/AstraZeneca/kgem-in-drug-discovery

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

drug-discovery drug-discovery-knowledge-graph knowledge-graph knowledge-graph-embedding-models knowledge-graph-embeddings target-prediction

Last synced: 28 Sep 2025

https://github.com/astrazeneca/kgem-in-drug-discovery

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

drug-discovery drug-discovery-knowledge-graph knowledge-graph knowledge-graph-embedding-models knowledge-graph-embeddings target-prediction

Last synced: 08 May 2025

https://github.com/sochdb/sochdb

SochDB is a high-performance embedded, ACID-compliant vector database purpose-built for AI agents and memory

ai-agents ai-agents-mcp ai-agents-memory database embeddings knowledge knowledge-graph knowledge-graph-embeddings knowledge-graphs-embeddings llm llm-databases llms toon vector-database vector-database-python vector-databases

Last synced: 13 Jun 2026

https://github.com/cthoyt/doctoral-thesis

📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

biocuration biological-expression-language computational-biology curation data-integration knowledge-graph-embeddings knowledge-graphs networks-biology simulation systems-biology

Last synced: 03 Jan 2026

https://github.com/hybrid-kg/clep

🤖 A Python Package for generating new patient representations driven by data and prior knowledge

bioinformatics embeddings hybrid-data knowledge-driven-framework knowledge-graph knowledge-graph-embeddings machine-learning patient-data

Last synced: 21 Jul 2025

https://github.com/greenelab/knowledge-graph-review

A literature review for constructing and using knowledge graphs in a biomedical setting.

knowledge-graph-embeddings knowledge-graphs literature-review natural-language-processing text-mining

Last synced: 06 Mar 2026

https://github.com/tail-unica/hopwise

hopwise: A Python Library for Explainable Recommendation based on Path Reasoning over Knowledge Graphs, ACM CIKM '25

interpretability-and-explainability knowledge-graph-embeddings link-prediction path-reasoning recommender-systems

Last synced: 14 Jan 2026

https://github.com/llm-db/mlkv

MLKV: Efficiently Scaling up Large Embedding Model Training with Disk-based Key-Value Storage (ICDE 2025 Industry Track)

graph-neural-networks key-value-storage knowledge-graph-embeddings machine-learning recommender-system

Last synced: 19 Jan 2026

https://github.com/metaphacts/linkedpaperswithcode

Code for generating Linked Papers with Code a high-quality RDF knowledge graph with metadata about the machine learning landscape.

knowledge-graph knowledge-graph-embeddings linked-open-data machine-learning scholarly-metadata

Last synced: 18 Jan 2026

https://github.com/dice-group/tab2onto

Tab2Onto: Unsupervised Semantification with Knowledge Graph Embeddings

clustering entity-typing knowledge-graph-embeddings semantification

Last synced: 24 Jun 2025

https://github.com/ssdeanx/branch-thinking-mcp

Branch-Thinking MCP Tool A TypeScript-powered MCP server for managing parallel branches of thought, semantic cross-references, and persistent tasks. Features dynamic scoring, AI-generated insights, batch operations, and visual graph navigation for advanced agentic workflows.

agentic-ai agents cache cognitive-architecture cross-referencing insight-generation knowledge-graph knowledge-graph-embeddings mcp mcp-server mcp-tools nodejs semantic-search task-management task-management-system tasks-manager typescript workflow workflow-automation

Last synced: 18 Apr 2026

https://github.com/disi-unibo-nlp/kg-emb-link-pred

[MDPI Electronics - Graph Machine Learning] Comprehensive Analysis of Knowledge Graph Embedding Techniques Benchmarked on Link Prediction

graph-neural-networks knowledge-graph-embeddings knowledge-graph-representation link-prediction pytorch

Last synced: 07 Apr 2026

https://github.com/toondb/toondb

ToonDB is an embedded-first database built for AI applications: TOON output for compact context, columnar storage, built‑in vector search, and ACID transactions.

ai-agents ai-agents-mcp ai-agents-memory database embeddings knowledge knowledge-graph knowledge-graph-embeddings knowledge-graphs-embeddings llm llm-databases llms toon vector-database vector-database-python vector-databases

Last synced: 12 Jan 2026

https://github.com/cthoyt/cthoyt.github.io

My personal website, served at https://cthoyt.com

artificial-intelligence biocuration bioinformatics biological-expression-language cheminformatics deep-learning drug-discovery drug-repurposing drug-synergy knowledge-graph-embeddings knowledge-graphs machine-learning obofoundry ontologies proteochemometrics target-prioritization target-validation toxicology utterances wikidata

Last synced: 02 Jan 2026

https://github.com/dice-group/gates

Graph Attention Networks for Entity Summarization is the model that applies deep learning on graphs and ensemble learning on entity summarization tasks.

deep-learning-on-graphs ensemble-learning entity-summarization graph-attention-network knowledge-graph-embeddings text-embeddings