Projects in Awesome Lists by MetExplore
A curated list of projects in awesome lists by MetExplore .
https://github.com/metexplore/miom
Constraint-based modeling of metabolism using Mixed Integer Optimization
cobrapy constraint-based-modeling flux-balance-analysis genome-scale metabolism milp modeling optimization python reconstruction
Last synced: 14 Oct 2025
https://github.com/metexplore/dexom
Diversity-based enumeration of optimal context-specific metabolic networks
cobra-toolbox constraint-based-modeling metabolic-engineering metabolic-network metabolic-pathways metabolic-reconstruction metabolism omics-data-integration optimization
Last synced: 14 Oct 2025
https://github.com/metexplore/met4j
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.
Last synced: 13 Oct 2025
https://github.com/metexplore/phnmnl-fingerprintclustering
Performs unsupervised clustering among a metabolic network from a fingerprint
Last synced: 20 Jul 2025
https://github.com/metexplore/dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
cobrapy constraint-based-modeling metabolism omics-data-integration optimization python
Last synced: 24 Aug 2025
https://github.com/metexplore/cobratoolbox-lib
COBRA Toolbox without submodules and minor modifications to improve reproducibility
Last synced: 22 Jul 2025
https://github.com/metexplore/insilico_metabolic_analyses_tutorials_and_courses
In this repo are listed all the public resources to learn in silico metabolic analyses
Last synced: 13 Feb 2026
https://github.com/metexplore/dexom-evaluation
DEXOM submodule with data for evaluation
Last synced: 16 Oct 2025
https://github.com/metexplore/phnmnl-pathwayenrichment
pathway enrichment tool for Docker containerization into Galaxy PhenoMeNal instance
Last synced: 11 Sep 2025