https://github.com/sebastian-gregoricchio/snhic

Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.

compartments dchic genova hi-c hic hicexplorer loop selfish snakemake snakemake-pipeline stripenn tad

Last synced: 31 May 2026