Projects in Awesome Lists tagged with pairwise-alignment

A curated list of projects in awesome lists tagged with pairwise-alignment .

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https://github.com/quim0/wfa-gpu

GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment

bioinformatics cuda gpu pairwise-alignment sequence-alignment

Last synced: 21 Jun 2025

https://github.com/iosonofabio/seqanpy

Fast pairwise sequence alignment using SeqAn, in Python.

pairwise-alignment python python-wrapper seqan sequence-alignment swig

Last synced: 13 Apr 2025

https://github.com/orangesi/bam2msa

convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region

alignment bam bioinformatics crystal-lang msa pairwise-alignment

Last synced: 30 Jun 2025

https://github.com/orangeSi/bam2msa

convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region

alignment bam bioinformatics crystal-lang msa pairwise-alignment

Last synced: 10 Jul 2025

https://github.com/odoluca/fast-nw-and-sw-pairwise-alignment-using-numba-jit

This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment

alignment cython dna-sequences gotoh needleman-wunsch numba pairwise pairwise-alignment protein-sequences pypy3 python python-3-6 smith-waterman