Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by odoluca
A curated list of projects in awesome lists by odoluca .
https://github.com/odoluca/g4catchall
G4Catchall is a python package designed to scan given DNA/RNA sequences for G-quadruplexes with or without atypical features
Last synced: 13 Nov 2024
https://github.com/odoluca/fast-nw-and-sw-pairwise-alignment-using-numba-jit
This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
alignment cython dna-sequences gotoh needleman-wunsch numba pairwise pairwise-alignment protein-sequences pypy3 python python-3-6 smith-waterman
Last synced: 15 Oct 2024
https://github.com/odoluca/jasco_jws_reader
This project aims to read jws files obtained from jasco spectrometers.
Last synced: 13 Nov 2024
https://github.com/odoluca/low_mutable_sequence_extraction
Discovery of low mutable sequence using multiple sequence alignment, nucleotide substitution model, protein sequences and a amino acid substitution model
Last synced: 13 Nov 2024