Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by ComputationalPhysiology
A curated list of projects in awesome lists by ComputationalPhysiology .
https://github.com/computationalphysiology/simcardems
Simula Cardiac ElectroMechanics Solver
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/ap_features
Package to compute features of traces from action potential models
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/oasisx
Next generation Open Source Navier Stokes solver using FEniCSx
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/cardiac-geometries
Tool for creating idealised cardiac geometries and microstructure
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/cbcbeat
An adjoint-enabled framework for computational cardiac electrophysiology
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/m3h3
An open source framework for cardiac modelling using FEniCS.
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/cardiac-geometriesx
Cardiac-geometries for dolfinx
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/pseudo-ecg
Library to compute pseudo ECG from bidomain and monodomain simulations
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/circulation
Cardiac Circulation Models
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/modelgraph
A tool for visualizing dependencies between different components of your model
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/goss
General ODE System Solver
cpp ode ode-solver odeint python
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/ldrb
A software for assigning myocardial fiber orientations based on the Laplace Dirichlet Ruled-Based algorithm
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/gotran
Library for declaring and translating ODEs
Last synced: 23 Oct 2024
https://github.com/computationalphysiology/docker_workflows
A simple guide on how to use docker in your development workflow
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/mesh-generation-guide
A visual guide to mesh generation from medical images using open-source tools available for any operating system.
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/computationalphysiology.github.io
Home page https://computationalphysiology.github.io
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/fenics-geometry
A library handling geometries for Fenics-based problems. Based on pulse.geometry by Henrik Finsberg
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/mps_motion
Library for tracking motion in cardiac mps data
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/drug-database
Command line interface for getting info about drugs
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/0d-mechanics-simulator
Simple 0D mechanics simulator
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/uio-digital-scholarship-days
Material for workshop on Digital Scholarship Days at UiO
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/journal_club
List of relevant papers for journal cub in Computational Physiology department at Simula
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/mps_data_parser
Tool for parsing information from filenames
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/mps
Tools for working with mps files
cardiac heart-on-chip image-analysis mps organ-on-chip
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/suurph_mechanics_docker
Docker files, notebooks and data for mechanics stream of Suurph summer school 2019
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/sscp_2023_project6
Model codes and demos for Simula summer school 2023 project 6
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/ciucci-2024
Source code for reproducing results of ciucci-2024 paper
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/heart_cells_in_action
A collection of notebooks for learning about cardiac cell models
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/odesolver
General suite of ODE solvers
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/slackbot
Post updates on Slack for the Computational Physiology department at Simula
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/ukb-atlas
Generate meshes from UK Biobank atlas
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/pulse_adjoint
An adjointable cardiac mechanics data assimilator.
adjoint cardiac data-assimilation dolfin-adjoint fenics mechanics
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/pulse_adjoint_deprecated
Data assimilation for cardiac mechanics
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/tissue-detection
Library for detecting tissue
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/modelparameters
Library for declaring nested parameteres in Python
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/dicom_image_tools
A collection of python-based tools for analyzing and modifying cardiac MRI data
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/fenics-nlsode
Coupled nonlinear solver and ode solver in FEniCS
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/hpc-ca-phospattern
Code and geometries for running simulations. The model is described in "Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks"
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/simula-lights
Tool controlling the lights at KA23
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/mps_automation
Scripts for automating the mps analysis
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/automatic-motion-estimation
Source code for reproducing results in the paper "Automatic motion estimation with applications to hiPSC-CMs"
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/perspect
PerSPECT: Perfusion SPECT model.
Last synced: 01 Dec 2024
https://github.com/computationalphysiology/constrained_mixture_models
Software and documentation for exploring homogenized constrained mixture models for cardiac growth and remodeling
Last synced: 01 Dec 2024