https://github.com/dincalcilab/samurai

A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

bioinformatics bioinformatics-pipeline nextflow nextflow-pipeline

Last synced: 02 Mar 2026

https://github.com/dincalcilab/samurai_paper_scripts

Last synced: 02 Mar 2026

https://github.com/dincalcilab/samurai-test-data

Public data files for SAMURAI tests

Last synced: 02 Mar 2026

https://github.com/dincalcilab/scnapattern

A workflow to calculate SCNA patterns as described in Pesenti et al.

Last synced: 02 Mar 2026