Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by Euphrasiologist
A curated list of projects in awesome lists by Euphrasiologist .
https://github.com/euphrasiologist/nu_plugin_plot
Plot numeric lists in Nushell as part of a pipeline
Last synced: 09 Jan 2025
https://github.com/Euphrasiologist/nu_plugin_plot
Plot numeric lists in Nushell as part of a pipeline
Last synced: 03 Nov 2024
https://github.com/euphrasiologist/nu_plugin_bio
Bioinformatics plugin for nushell.
Last synced: 09 Jan 2025
https://github.com/Euphrasiologist/nu_plugin_bio
Bioinformatics plugin for nushell.
Last synced: 03 Nov 2024
https://github.com/euphrasiologist/bib_to_refer
Turn a BibTex file format into a refer database for use with groff.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/phenotypic_plasticity_euphrasia
The source code for analyses on "Life history evolution and phenotypic plasticity in parasitic eyebrights (Euphrasia, Orobanchaceae)"
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/thesis
My PhD thesis, submitted in 2020 on the subject of taxonomic complexity in eyebrights and the British flora. This repository contains the markdown and latex documents, as well as the shell scripts to generate the final thesis.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/lwphylo
A lightweight, low level javascript library to plot phylogenies from a Newick file.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/refer
A cli tool to store a local mutable bibliographic database.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/gbs_v2_tassel_5
Shell Scripts for a Genotyping by Sequencing analysis.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/site
My website living on a Raspberry Pi
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/plotutils
Functions to help plot stuff in JavaScript.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/vcvglmm
Convenience functions to extract and manipulate variance covariance matrices from random effects from the packages lme4 and MCMCglmm.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/web_mining
Examples of methods to mine websites (among others) for their underlying databases.
beautifulsoup extraction plant-cvalue-database plants selenium
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/vcf_filtering
BASH scripts to filter VCF files for missing data in both SNP's and individuals (taxa).
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/vcf_to_gbs2ploidy
Format a VCF file, so it is compatible in the gbs2ploidy pipeline (https://CRAN.R-project.org/package=gbs2ploidy), and the paper (doi: https://doi.org/10.1111/1755-0998.12657)
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/winterbotany
Keys for Shrubs and Trees in the Winter
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/structure
Quick and easy STRUCTURE parse and plot.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/rosalind_scripts
My take (and sometimes snatching ideas from elsewhere) on the rosalind problems (http://rosalind.info/)
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/pop_dynamics
Functions of common equations (or modifications thereof) in biology, covering ecological, disease and evolutionary dynamics.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/gol
Exploration of evolutionary processes through simulations and games
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/host_parasite_simulations
Using simulations to understand host parasite dynamics in hemiparasitic plants
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/gb
Simple group-by algorithm for tabular data.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/aoc22
BASH solutions to advent of code 2022
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/filter_ab1
A small python script to filter .ab1 or .abi files in a directory on their phred quality scores.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/euphrasia_maps
Maps, using osmdata, of Euphrasia distributions
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/trfr
Parse output from tandem repeat finder
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/euphrasia_host_parasite
Scripts for two experiments over the years 2017/18 understanding variation in performance of Euphrasia between hosts and testing for Euphrasia:Host interactions
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/oxygraphis
An ecological graph library and CLI.
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/cross_ploidy
A review on the emerging importance of cross-ploidy hybridisation and introgression
Last synced: 09 Jan 2025
https://github.com/euphrasiologist/floral
A small tool to print out floral formulae of flowering plants.
Last synced: 09 Jan 2025