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Awesome

An open API service indexing awesome lists of open source software.

Projects in Awesome Lists by InformaticsMatters

A curated list of projects in awesome lists by InformaticsMatters .

https://github.com/informaticsmatters/pipelines

Containerised components for cheminformatics and computational chemistry

docker dockerfile python rdkit squonk squonk-pipelines

Last synced: 01 Mar 2026

https://github.com/informaticsmatters/docker-rdkit

Lightweight RDKit images for production deployment

docker-image dockerfile lightweight-images rdkit

Last synced: 23 Aug 2025

https://github.com/informaticsmatters/openshift-jenkins-buildah-slave

A Jenkins CI/CD agent based on the Maven agent that contains buildah (plus other goodies)

jenkins jenkins-slave openshift openshift-jenkins-slave

Last synced: 12 Apr 2025

https://github.com/informaticsmatters/squonk

Squonk platform and computational notebook

chemaxon docker gradle java openshift rdkit squonk

Last synced: 06 Oct 2025

https://github.com/informaticsmatters/docking-validation

Validation studies for docking related studies

Last synced: 20 Mar 2025

https://github.com/informaticsmatters/virtual-screening

Virtual screening tools and Squonk2 jobs

squonk2 squonk2-jobs

Last synced: 22 Feb 2026

https://github.com/informaticsmatters/standardize-molecule

Utilities for SMILES analysis

Last synced: 12 Aug 2025

https://github.com/informaticsmatters/rdkit

RDkit build

Last synced: 13 Oct 2025

https://github.com/informaticsmatters/nextflow-pcluster

Nextflow AWS Parallel Cluster Configuration

Last synced: 11 Sep 2025

https://github.com/informaticsmatters/rdock_docker

Docker build for rDock

Last synced: 26 Apr 2026

https://github.com/informaticsmatters/trigger-ci-action

A GitHub Action to trigger CI build

Last synced: 12 Apr 2025

https://github.com/informaticsmatters/react-sci-components

Resusable react components for scientific applications

Last synced: 18 May 2026

https://github.com/informaticsmatters/fragmentor

Fragment network build optimisation

Last synced: 12 Apr 2025

https://github.com/informaticsmatters/squonk-react-mui-theme

Material UI theme used in Squonk's React applications

Last synced: 12 Apr 2025

https://github.com/informaticsmatters/ansible-galaxy-cloud

Ansible play and roles to orchestrate the graph-processing cloud instance

Last synced: 16 May 2026

https://github.com/informaticsmatters/squonk2-data-manager-ui

Web UI for the Squonk Data Manager

squonk2

Last synced: 19 May 2026

https://github.com/informaticsmatters/trigger-awx-action

A GitHub Action that triggers execution of a named template on an AWX server

Last synced: 09 Feb 2026

https://github.com/informaticsmatters/squonk2-data-manager-js-client

Generates a JS client and docs for the Squonk Data Manager API

squonk2

Last synced: 20 Mar 2025

https://github.com/informaticsmatters/pipelines-obabel

Open Babel based pipelines

squonk-pipelines

Last synced: 22 Jul 2025

https://github.com/informaticsmatters/kubernetes-to-puml

A Python 3 utility that converts cluster objects to a PlantUML diagram.

Last synced: 11 Jun 2025

https://github.com/informaticsmatters/ansible-infrastructure

Ansible logic for Kubernetes infrastructure provisioning

Last synced: 21 May 2026

https://github.com/informaticsmatters/fragnet

Fragment network tooling

Last synced: 07 Apr 2026

https://github.com/informaticsmatters/ansible-okd-gpu

Ansible playbooks to configure an OKD (OpenShift) server for GPU workloads

Last synced: 20 Mar 2025

https://github.com/informaticsmatters/squonk2-account-server-js-client

Generates a JS client and docs for the Account Server API

squonk2

Last synced: 09 Mar 2026

https://github.com/informaticsmatters/data-manager-job-template

Template repo for Data Manager Job implementations

squonk2-jobs

Last synced: 25 Feb 2026

https://github.com/informaticsmatters/camelish

Camel tools for chemistry and biology

Last synced: 18 Jul 2025

https://github.com/informaticsmatters/squonk2-openapi-js-client-generator

TypeScript client generator for OpenAPI files. GitHub Action to generate, build & publish a client with docs!

Last synced: 08 May 2026

https://github.com/informaticsmatters/docker-squonk-groovy

A container image to run groovy code from Squonk

Last synced: 20 May 2026

https://github.com/informaticsmatters/squonk2-python-client

Data Manager API Utilities

squonk2

Last synced: 22 Jul 2025

https://github.com/informaticsmatters/example-java-servlet

ORN deployment example

Last synced: 21 May 2026

https://github.com/informaticsmatters/squonk2-data-manager-workflow-engine

The Schema, Decoder and Execution Engine for Data Manager Workflows

squonk2

Last synced: 16 Jan 2026

https://github.com/informaticsmatters/eslint-config-squonk

ESLint config used by Squonk front-end apps

Last synced: 08 Mar 2026

https://github.com/informaticsmatters/docker-mysql-to-pg-migrator

A container image to migrate exported MySQL data into a PostgreSQL database

Last synced: 08 Apr 2026

https://github.com/informaticsmatters/clubhouse-exporter-ansible

An AWX-compliant Playbook and Role to export Clubhouse data

Last synced: 15 May 2026

https://github.com/informaticsmatters/squonk2-smartcyp

Cytochrome P450 predictions using SmartCYP

squonk2 squonk2-jobs

Last synced: 07 Aug 2025

https://github.com/informaticsmatters/squonk2-data-manager-metadata

A metadata package for the Data Tier Data Manager service

squonk2

Last synced: 11 Feb 2026

https://github.com/informaticsmatters/lac

ServiceProeprtyDescriptor

Last synced: 22 Aug 2025

https://github.com/informaticsmatters/squonk2-data-manager-job-utilities

Python-based utilities for Data Manager Jobs

squonk2

Last synced: 23 Aug 2025

https://github.com/informaticsmatters/operator-lazar

An experimental operator for the lazar predictive toxicology service

Last synced: 04 May 2026

https://github.com/informaticsmatters/ansible-role-cert-manager

A basic ansible role to deploy the Kubernetes cert-manager

Last synced: 18 May 2026

https://github.com/informaticsmatters/fragnet-ansible

Ansible Playbooks (and Roles) to support fragnet

Last synced: 13 May 2026

https://github.com/informaticsmatters/docker-keycloak

A specialised keycloak container image

Last synced: 12 Apr 2026

https://github.com/informaticsmatters/squonk2-protobuf

Informatics Matters cross-product protocol buffers

squonk2

Last synced: 12 Apr 2025

https://github.com/informaticsmatters/squonk2-data-manager-job-decoder

Provides decoding capabilities for Job definitions

squonk2

Last synced: 23 Apr 2025

https://github.com/informaticsmatters/docker-neo4j-ansible

Ansible Playbooks (and Roles) for docker-neo4j

Last synced: 13 Apr 2026

https://github.com/informaticsmatters/docker-mysql-to-pg-migrator-ansible

A kubernetes-compliant Ansible playbook and Role for the execution of the MySQL to PostgreSQL migrator

Last synced: 13 Apr 2026

https://github.com/informaticsmatters/galaxy-patch

An Ansible playbook to patch our Galaxy cluster

Last synced: 06 Sep 2025

https://github.com/informaticsmatters/openjdk_docker

Open JDK image that includes the Docker engine binaries

Last synced: 14 Jun 2025

https://github.com/informaticsmatters/r-roc

R with ROCR packages

Last synced: 19 May 2026

https://github.com/informaticsmatters/squonk-ansible

Ansible playbooks and roles to deploy Squonk (to Kubernetes)

Last synced: 18 May 2026

https://github.com/informaticsmatters/ansible-gizmos

Generally useful Ansible playbooks (and roles)

Last synced: 13 Oct 2025

https://github.com/informaticsmatters/bandr

(PostgreSQL) Backup and recovery container images (OpenShift)

Last synced: 27 Jan 2026

https://github.com/informaticsmatters/squonk2-deck

A textual summary of Squonk2 environments

squonk2

Last synced: 27 Jan 2026

https://github.com/informaticsmatters/rdkit_java_examples

Example code for using RDKit from Java

Last synced: 18 Oct 2025

https://github.com/informaticsmatters/squonk2-data-manager-job-operator-ansible

Ansible playbooks for the Squonk2 Job Operator

squonk2 squonk2-jobs

Last synced: 23 Jan 2026

https://github.com/informaticsmatters/docker-neo4j

A specialised build of neo4j used by a number of projects

Last synced: 16 Mar 2026

https://github.com/informaticsmatters/squonk2-data-manager-job-operator

An arbitrary Job-execution operator for the Data Manager API

k8s-operator squonk2

Last synced: 15 Apr 2026

https://github.com/informaticsmatters/discourse-ansible

An AWX-compliant deployment of Discourse

Last synced: 10 Feb 2026

https://github.com/informaticsmatters/trigger-awx

AWX Job execution utility based on the Tower CLI

Last synced: 11 Feb 2026

https://github.com/informaticsmatters/squonk2-data-manager-job-tester

A test utility for Data Manager Job repositories

squonk2

Last synced: 13 Feb 2026

https://github.com/informaticsmatters/docker-sql-client

Code for a simple SQL client container image

Last synced: 17 Apr 2026

https://github.com/informaticsmatters/ansible-role-infrastructure-data

An Ansible Role to configure the infrastructure database

Last synced: 18 Apr 2026

https://github.com/informaticsmatters/rjsf-tester

RJSF with modified playground that parses YAML

Last synced: 18 Apr 2026

https://github.com/informaticsmatters/squonk2-data-manager-ui-ansible

Ansible (AWX) Kubernetes deployment scripts for the Mini-Apps Data-Tier UI

squonk2

Last synced: 20 Apr 2026

https://github.com/informaticsmatters/sdf-format-support

A DataTier Format-Support Implementation for SDF

squonk2

Last synced: 03 May 2026

https://github.com/informaticsmatters/ansible-role-awx-composer

A Role to Compose (configure) an AWX server

Last synced: 04 May 2026

https://github.com/informaticsmatters/pipeline-tester-action

A composite run steps action that runs our PipelineTester (using groovy)

Last synced: 06 May 2026

https://github.com/informaticsmatters/fragmentor-k8s-orchestration

Ansible playbooks for kubernetes deployment of the fragmentor

Last synced: 07 May 2026

https://github.com/informaticsmatters/squonk-docs

Basic Squonk documentation for a customer site

Last synced: 08 May 2026

https://github.com/informaticsmatters/postgresql-ansible

A (simple) PostgreSQL deployment

Last synced: 08 May 2026

https://github.com/informaticsmatters/docker-volume-replicator

A small image that replicates a (kubernetes) volume

Last synced: 08 May 2026

https://github.com/informaticsmatters/docker-fragnet-test

A pre-configured graph (neo4j) database for franget test purposes

Last synced: 09 May 2026

https://github.com/informaticsmatters/smi-format-support

A DataTier Format-Support Implementation for CSV

squonk2

Last synced: 10 May 2026

https://github.com/informaticsmatters/squonk-frontend

Monorepo for all Squonk (v2) apps and libraries

Last synced: 10 May 2026

https://github.com/informaticsmatters/trigger-repository-dispatch

A Python module to simplify creating GitHub repository dispatch events and payloads

Last synced: 10 May 2026

https://github.com/informaticsmatters/jchem-demo-project

Demo project showing how to set up JChem lib from gradle

Last synced: 11 May 2026

https://github.com/informaticsmatters/vercel-auth-test

A quick test repo to get nextjs auth working better on Vercel

Last synced: 20 Mar 2025