Projects in Awesome Lists by NeotomaDB
A curated list of projects in awesome lists by NeotomaDB .
https://github.com/neotomadb/metaextractor
A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma
crossref doi machine-learning metadata-extraction neotoma nlp relevance xdd
Last synced: 21 Jul 2025
https://github.com/neotomadb/stratigraphicdiagrammer
Repo, code base, and issue tracker for Neotoma Explorer's Stratigraphic Diagrammer
Last synced: 08 Feb 2026
https://github.com/neotomadb/bulk-baconizing
Using bacon to generate a large number of new chronologies from existing Neotoma records.
bacon chronologies neotoma paleoecology rmarkdown travis workflow
Last synced: 07 Feb 2026
https://github.com/neotomadb/api_nodetest
node.js and express implementation for the Neotoma API
api express neotoma neotoma-api neotoma-database nodejs paleoecology swagger
Last synced: 21 Jul 2025
https://github.com/neotomadb/explorer
Neotoma Explorer - issue tracker and code repository
Last synced: 21 Jul 2025
https://github.com/neotomadb/neotomapostgres
Docker image of the Neotoma SQL database
Last synced: 23 Feb 2026
https://github.com/neotomadb/rangemapper
Code for making animations of Neotoma taxa using Carto VL
Last synced: 18 Feb 2026
https://github.com/neotomadb/workshops
This repository is a location for storing and developing workshops materials.
Last synced: 16 Aug 2025
https://github.com/neotomadb/workbooks
A repository for paleoecology-specific workflows.
Last synced: 08 Feb 2026
https://github.com/neotomadb/neotoma_doi
Managing DOIs with a postgres database and the DataCite API.
Last synced: 21 Jul 2025
https://github.com/neotomadb/ndblandingpage
A repository for DOI landing pages using Vue.js as the front-end.
Last synced: 21 Jul 2025
https://github.com/neotomadb/epd_binder
Neotoma Binder for EPD 2022 with sample workflows
Last synced: 21 Jul 2025
https://github.com/neotomadb/neotoma_lakes
A repository for managing the matching of lake data between national hydrographic databases and Neotoma records.
database lakes neotoma paleoecology rmarkdown usgs
Last synced: 22 Feb 2026
https://github.com/neotomadb/neotoma_sql
Repository for functions associated with Neotoma's Postgres DB
neotoma paleoecology postgres sql
Last synced: 31 Aug 2025
https://github.com/neotomadb/paleovisualization
A broad survey of visualization techniques in the geoscientific literature, based on publications that cite Neotoma.
Last synced: 05 Feb 2026
https://github.com/neotomadb/xlsx2tilia
Tilia file creation (XML) from an MS Excel database and template in Python
neotoma-database python tilia xml
Last synced: 21 Jul 2025
https://github.com/neotomadb/neotomadb.github.io
Neotoma website on github.
Last synced: 06 Feb 2026
https://github.com/neotomadb/neotomadocker
A repository for the Neotoma Docker image and associated tooling.
Last synced: 06 Feb 2026
https://github.com/neotomadb/faunmap_import
Scripts and Files for exporting FAUNMAP data to Neotoma
Last synced: 21 Jul 2025
https://github.com/neotomadb/bulkuploader
An R package to facilitate bulk-uploading records to the Neotoma Paleoecology Database.
Last synced: 21 Jul 2025
https://github.com/neotomadb/databus
The Neotoma Paleoecology Database Data Bulk Uploader System
Last synced: 05 Mar 2026
https://github.com/neotomadb/assigndois
A repository describing the motivation for, and detailing the process of, minting DOIs for Neotoma
database datacite doi leaflet neotoma paleoecology r rmarkdown
Last synced: 19 May 2026
https://github.com/neotomadb/landingpagev3
A repository for the updated (Vue3) Neotoma Landing Pages
Last synced: 21 Jul 2025
https://github.com/neotomadb/landingpages
A repository specifically for generating RMarkdown landing pages for Neotoma Datasets
database landing-page metadata neotoma-database r rmarkdown schema-org
Last synced: 19 Feb 2026
https://github.com/neotomadb/repo_best_practices
A repo that describes the recommended practices for setting up new repositories within the Neotoma Paleoecology Database.
Last synced: 12 Feb 2026
https://github.com/neotomadb/neotomasummary
A repository to generate an overal summary of the Neotoma DB from a set of SQL and API calls.
neotoma-database rmarkdown sql
Last synced: 04 Feb 2026
https://github.com/neotomadb/neotoma_article_api
A repository for the article relevance tool API
Last synced: 10 Jan 2026
https://github.com/neotomadb/amqua_binder
A repository for the 2022 AMQUA Neotoma workshop
Last synced: 17 Feb 2026
https://github.com/neotomadb/neotomapydoi
A repository for managing Neotoma DataCite DOIs using Python.
Last synced: 07 Sep 2025
https://github.com/neotomadb/clean_backup
A repository to generate automated backups for the Neotoma PostgreSQL database using AWS infrastructure
aws-batch aws-cli aws-ecr aws-fargate bash dockerfile neotoma neotoma-database nsf paleoecology postgresql
Last synced: 14 Oct 2025
https://github.com/neotomadb/stateofdb_dockercompose
Building the State of the DB from 2 Docker containers: one for Postgres, one for RStudio
Last synced: 05 Feb 2026
https://github.com/neotomadb/api_dockers
A repository for docker containers that can be used to run a local version of the Neotoma infrastructure.
Last synced: 25 Feb 2026
https://github.com/neotomadb/faircare_rcn
A repository for workshop knowledge and materials as part of the Past Biodiversity Change RCN
Last synced: 06 Feb 2026
https://github.com/neotomadb/dwc-mapping
A document explaining how we will map Neotoma against the DarwinCore Schema
Last synced: 06 Feb 2026
https://github.com/neotomadb/notebooks
A place for self-contained notebooks to show common paleoecological operations.
Last synced: 06 Feb 2026
https://github.com/neotomadb/education_paper
A paper in prep about education with Neotoma
Last synced: 07 Feb 2026
https://github.com/neotomadb/qsr_manuscript
Repository for scripts and figures associated with Neotoma ms. to be submitted to QSR
Last synced: 25 Feb 2026
https://github.com/neotomadb/tilia_api
A repository for the implementation of the Tilia/uploader API
Last synced: 21 Jul 2025
https://github.com/neotomadb/sql_project_repository
A repository for SQL project starts.
Last synced: 21 Jul 2025
https://github.com/neotomadb/taxoninsertion
A package to bulk upload taxonomic data (beetles in this case) from Family/genus/species info.
Last synced: 21 Jul 2025
https://github.com/neotomadb/neotoma_database_functions
A repository for managing database functions for the Neotoma Database.
Last synced: 05 Feb 2026
https://github.com/neotomadb/article_project
A project for the Docker Containers associated with the article-recommender.
Last synced: 21 Jul 2025
https://github.com/neotomadb/authornetwork
A repository for the test version of the Neotoma Author Network Shiny app.
Last synced: 21 Jul 2025
https://github.com/neotomadb/interoperability_deepdive
A repository for managing the FAIROS Quaternary Interoperability project.
neotoma neotoma-database network-analysis networkx paleoecology xdeepdive
Last synced: 21 Jul 2025
https://github.com/neotomadb/neotoma_bookdown
An online manual for the Neotoma Database, authored using Bookdown.
Last synced: 21 Jul 2025
https://github.com/neotomadb/r-workshop
Developed R-workshop with webr-r and Quarto documents. Maintaining the binder at CurrentWorkshop for now.
Last synced: 21 Jul 2025