https://github.com/wayscience/duckdb_zarr

A DuckDB extension for querying Zarr arrays with SQL through relational projection.

Last synced: 15 Jun 2026

https://github.com/wayscience/ome-arrow

Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

Last synced: 08 Apr 2026

https://github.com/wayscience/jump-single-cell

Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

cell-painting cellprofiler image-analysis image-processing pycytominer python

Last synced: 17 Jan 2026

https://github.com/wayscience/software-landscape-analysis

Enabling software landscape analyses to better understand existing efforts or solutions.

Last synced: 17 Jan 2026

https://github.com/wayscience/zedprofiler

Featurizing high-content 3D microscopy image

Last synced: 15 Jun 2026

https://github.com/wayscience/napari-ome-arrow

A Napari plugin for OME-Arrow and OME-Parquet bioimage data

Last synced: 09 Mar 2026

https://github.com/wayscience/iceberg-bioimage

A format-agnostic framework for cataloging and querying bioimaging data (Parquet, OME-Zarr, OME-TIFF) with Apache Iceberg

Last synced: 15 Jun 2026

https://github.com/wayscience/us_tie_zhang_et_al_2020_py

Python package for transport-of-intensity equation ported from MATLAB to Python using Claude Sonnet 4.6

Last synced: 15 Jun 2026