Projects in Awesome Lists tagged with cellprofiler
A curated list of projects in awesome lists tagged with cellprofiler .
https://github.com/CellProfiler/CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
cellprofiler cellprofiler-analyst image-analysis machine-learning
Last synced: 07 May 2025
https://github.com/cytomining/pycytominer
Python package for processing image-based profiling data
carpenter-lab cellprofiler cytominer image-processing microscopy morphological-profiling python way-lab
Last synced: 07 Jan 2026
https://github.com/bodenmillergroup/imcsegmentationpipeline
A pixel classification based multiplexed image segmentation pipeline
cellprofiler imc pipeline pixel-classification segmentation ubuntu
Last synced: 15 Apr 2025
https://github.com/broadinstitute/cmqtl
High-dimensional phenotyping to define the genetic basis of cellular morphology
carpenter-lab cellprofiler morphology primary-cells profiling quantitative-trait-loci
Last synced: 05 Sep 2025
https://github.com/wayscience/jump-single-cell
Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)
cell-painting cellprofiler image-analysis image-processing pycytominer python
Last synced: 17 Jan 2026
https://github.com/apahl/cellpainting
Tools for Processing Results from CellPainting Assay
cellprofiler nim-lang pandas rdkit
Last synced: 13 May 2025
https://github.com/pranjaldhole/singularity-cellprofiler
Singularity-based linux container with CellProfiler 4 pre-installed into it.
cellprofiler containers singularity singularity-containers singularity-hub tutorial-sourcecode
Last synced: 07 Oct 2025
https://github.com/apahl/cellpainting2
Analyzing Cell Painting results with Dask and Pandas - not yet ready for use by others
cellprofiler dask jupyter-notebook pandas rdkit
Last synced: 09 May 2026
https://github.com/dirmeier/rnaiutilities
A collection of python modules and command line tools for processing image-based RNAi screens.
cellprofiler database microscopy python rnai sqlite
Last synced: 09 May 2026
https://github.com/apahl/img_viewer
A plate image viewer for visually analysing Cell Painting results
Last synced: 01 Apr 2025