Projects in Awesome Lists tagged with carpenter-lab
A curated list of projects in awesome lists tagged with carpenter-lab .
https://github.com/cytomining/pycytominer
Python package for processing image-based profiling data
carpenter-lab cellprofiler cytominer image-processing microscopy morphological-profiling python way-lab
Last synced: 07 May 2025
https://github.com/broadinstitute/imaging-platform-pipelines
Cell Painting and other pipelines from the Imaging Platform
Last synced: 20 Feb 2025
https://github.com/broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
cancer carpenter-lab cell-painting machine-learning morphology pharmacodynamics resistance
Last synced: 31 Dec 2024
https://github.com/broadinstitute/cmqtl
High-dimensional phenotyping to define the genetic basis of cellular morphology
carpenter-lab cellprofiler morphology primary-cells profiling quantitative-trait-loci
Last synced: 31 Dec 2024
https://github.com/broadinstitute/cell-painting-vae
Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic
carpenter-lab cell-painting drug-polypharmacology image-based-profiling vae way-lab
Last synced: 31 Dec 2024
https://github.com/broadinstitute/pe2loaddata
Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module
Last synced: 31 Dec 2024
https://github.com/broadinstitute/imaging-bbbc
Freely Downloadable Microscopy Image Sets
Last synced: 20 Feb 2025
https://github.com/broadinstitute/imaging-backup-scripts
Scripts to backup data for the Imaging Platform
Last synced: 31 Dec 2024