Ecosyste.ms: Awesome

https://github.com/ctboughter/aims

AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation

bioinformatics biophysics immunology kivy python3

Last synced: 07 Nov 2024

https://github.com/ctboughter/pre_memseal

A repository for storing and documenting pre-processing scripts for various 'Omics pipelines in association with the MEMSEAL DARPA project.

Last synced: 29 Nov 2024

https://github.com/ctboughter/cdr_bioinformatics

Trying to automatically pull out CDR loop sequences from a given antibody full sequence. Fairly rudimentary for now, but it works! Compares well to human selected CDR loop sequences.

Last synced: 29 Nov 2024

https://github.com/ctboughter/string_method_automate

So Benoit Roux wants to move away from using DHAM to optimize an initial string path for calculating the binding free energy of protein-protein interactions... Here I try to do that

Last synced: 29 Nov 2024

https://github.com/ctboughter/auto_vina_analysis

In this code, I create a high throughput Autodock Vina pipeline for testing the docking of a large array of lipid-like molecules in an MHC-like molecule

Last synced: 29 Nov 2024

https://github.com/ctboughter/abeta_histogram

Create a script to read in AFM data (made originally for ABeta40 data analysis) and plot it in a histogram/quantitate that histogram. Made 3 versions of it and figured this is "git version manager"

Last synced: 29 Nov 2024

https://github.com/ctboughter/testing12

Let me just try out how to do this thing

Last synced: 29 Nov 2024

https://github.com/ctboughter/aims_doc

Finally get a nicer documentation page started

Last synced: 29 Nov 2024

https://github.com/ctboughter/ml_practice

Trying to make a classifier of a limited dataset (for now). Mostly for practice, but may become functional sometime.

Last synced: 29 Nov 2024

https://github.com/ctboughter/sim_visualization

Let's see if I can get a nice folder that stores all of the different ways that I visualize data from my protein-protein simulations

Last synced: 29 Nov 2024

https://github.com/ctboughter/presto

An automated pipeline for the analysis of TCR-pMHC structures deposited to the PDB

Last synced: 29 Nov 2024

https://github.com/ctboughter/countasap

An easy to use python-based package for generating ASAPseq Count Matrices from FASTQ files

Last synced: 14 Oct 2024

https://github.com/ctboughter/basketstats

Here is a rough draft of everything I'm working on for this new program

Last synced: 29 Nov 2024

https://github.com/ctboughter/boughter.github.io

Creating a repository to host my first every personal website. Never done this before, but it might be a good skill to have.

Last synced: 29 Nov 2024

https://github.com/ctboughter/manuscript_md_analysis

An open repository containing MD simulation analysis scripts used for a few manuscripts

Last synced: 29 Nov 2024

https://github.com/ctboughter/aims_manuscripts

This is a repository for the explicit replication of AIMS analysis published in a range of manuscripts

Last synced: 29 Nov 2024