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Projects in Awesome Lists tagged with biophysics

A curated list of projects in awesome lists tagged with biophysics .

https://github.com/moldyn/clustering

Robust and stable clustering of molecular dynamics simulation trajectories.

biophysics clustering cpp cuda molecular-dynamics

Last synced: 11 Dec 2024

https://github.com/flatironinstitute/alens

a Living ENsemble Simulator -- a lens to help you watch biophysics

biophysics collision-detection cytoskeleton parallel-computing

Last synced: 23 Nov 2024

https://github.com/ctboughter/aims

AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation

bioinformatics biophysics immunology kivy python3

Last synced: 07 Nov 2024

https://github.com/joaorodrigues/openmm_scripts

Collection of Python scripts to setup and run simulations with OpenMM

biophysics molecular-dynamics openmm python

Last synced: 13 Oct 2024

https://github.com/christophmark/jointforces

A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).

biophysics collagen finite-elements material-simulation multicellular-aggregates particle-image-velocimetry spheroid traction-force-microscopy

Last synced: 22 Nov 2024

https://github.com/davidbhr/CompactionAnalyzer

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

bioinformatics biophysics cell cell-mechanics collagen compaction contractility fiber fibrosis image-processing imaging microscopy orientation structure tissue-analysis

Last synced: 14 Nov 2024

https://github.com/davidbhr/compactionanalyzer

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

bioinformatics biophysics cell cell-mechanics collagen compaction contractility fiber fibrosis image-processing imaging microscopy orientation structure tissue-analysis

Last synced: 22 Nov 2024

https://github.com/nico-curti/sysdyn

System Dynamics script utilities

biophysics examples homework system-dynamics systems-biology

Last synced: 07 Nov 2024

https://github.com/barbagroup/bempp_exafmm_paper

Manuscript repository for our research paper, including reproducibility packages for all results, and latex source files.

bem biophysics electrostatics fmm

Last synced: 06 Nov 2024

https://github.com/zimmerrol/rcp_spatio_temporal

Prediction spatio-temporal dynamics using Reservoir Computing

biophysics echo-state-networks esn machine-learning reservoir-computing

Last synced: 16 Dec 2024

https://github.com/peptoneltd/pepkalc

Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.

bioinformatics biophysics electrostatics polymer prediction protein protein-sequence protonation simulation

Last synced: 09 Nov 2024

https://github.com/gszep/lamellipodium

Supplementary code Mueller, J. et al. 2017. Load Adaptation of Lamellipodial Actin Networks

actin biophysics ist-austria lamellipodium python simulation

Last synced: 23 Oct 2024

https://github.com/gszep/double-exclusive-reporter

Code supplementary for Grant P. et al. 2020. Interpretation of morphogen gradients by a bistable circuit

biophysics julia-language microsoft morphogenesis simulation synthetic-biology

Last synced: 11 Dec 2024

https://github.com/babaid/probindnn

My bachelors thesis on predicting relative protein-protein binding affinity changes upon point mutations using graph neural networks.

bioinformatics biophysics deep-learning graph-neural-networks graphs lstm lstm-neural-networks neural-networks physics pytorch pytorch-geometric structural-bioinformatics

Last synced: 08 Nov 2024

https://github.com/daniel-elston/physics-reports

A selection of reports from my BSc Physics degree at the University of Bristol

astrophysics biophysics heat-capacity latex overleaf phonons physics stellar-evolution

Last synced: 17 Dec 2024

https://github.com/tsmbland/andi_challenge

Analysis of single particle tracking data for characterisation of anomalous diffusion, using convolutional neural networks. Submitted to the Anomalous Diffusion (AnDi) Challenge

biophysics convolutional-neural-networks deep-learning python signal-processing tensorflow time-series-analysis

Last synced: 06 Nov 2024

https://github.com/tsmbland/phd-thesis

PhD thesis: Molecular feedback and self-organisation in the PAR polarity network

biophysics cell-biology latex research systems-biology

Last synced: 06 Nov 2024

https://github.com/allencellmodeling/flins

Simulate a system of linear filaments

biophysics cell-biology muscle stress-fibers

Last synced: 09 Nov 2024

https://github.com/calvinsprouse/cwu_homework_tex

Doing homework in VSCode with LaTeX as an Overleaf alternative.

biophysics cwu homework latex math physics school

Last synced: 10 Nov 2024