Projects in Awesome Lists by babaid
A curated list of projects in awesome lists by babaid .
https://github.com/babaid/alzheimer-classification
Using pytorch to classify different stages of Alzheimer
Last synced: 19 Jul 2026
https://github.com/babaid/probindnn
My bachelors thesis on predicting relative protein-protein binding affinity changes upon point mutations using graph neural networks.
bioinformatics biophysics deep-learning graph-neural-networks graphs lstm lstm-neural-networks neural-networks physics pytorch pytorch-geometric structural-bioinformatics
Last synced: 17 May 2026
https://github.com/babaid/nix-openmm-reaxff-env
A simple setup with nix flakes, and nixGLNvidia that allows to build and use my openmm-reaxff plugin within an isolated and reproducible environment.
Last synced: 25 Jun 2025
https://github.com/babaid/odes
A library for solving ordinary differential equations
Last synced: 09 Apr 2026
https://github.com/babaid/decision-tree-classifier
Just a quick implementation of a decision tree in julia for educational purpose.
Last synced: 09 Apr 2026
https://github.com/babaid/conways-game-of-life
An implementation of Conway's Game of Life in C++ using the graphics library SFML.
Last synced: 09 Apr 2026
https://github.com/babaid/integra
A numerical integration library written in modern C++.
Last synced: 04 Aug 2025
https://github.com/babaid/ddmd
A project combining a generative drug discovery model with molecular dynamics simulations.
Last synced: 12 Sep 2025
https://github.com/babaid/aaperturb
A C++ library for the creation of a large dataset of amino acid sidechain perturbations, own PDB Parser code included and some other things related.
big-data gnn molecular-dynamics perturbation-methods structural-bioinformatics
Last synced: 10 Jun 2025
https://github.com/babaid/combinatorial-optimization
Some combinatorial optimization algorithms on graphs written in Julia.
combinatorial-optimization dijkstra-algorithm graph-algorithms graphs julia julialang kruskal-algorithm linear-algebra linear-programming prims-algorithm random-walk shortest-path-algorithm
Last synced: 05 Feb 2026
https://github.com/babaid/ising-model-simulation
A project containing simulations of Ising Chains known from theoretical physics.
computerscience ising-model physics simulation theoretical-physics
Last synced: 28 Jan 2026
https://github.com/babaid/balanced-amplification
This repo is the julia implementation of the results of the paper titled "Balanced amplification: a new mechanism of selective amplification of neural activity patterns" written by Murphy and Miller.
Last synced: 28 Jan 2026
https://github.com/babaid/aa-sidechain-perturbation
This is a proof of concept python project, where the aim is to perturb sidechains of amino acids by rotating them around predefined axes. This can be of use for GNNs.
Last synced: 20 Jun 2026